Browse Element(s) Details


OsAffx.4069.1.S1_at

Description tigr:9632.m04134
TID=OsAffx.4069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Caleosin related protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4317011/11Caleosin related protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43130Os.9512.1.A1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43130Os.55744.1.S1_at11/114+25307579..25315864Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os04g43140Os.20709.1.S1_at10/114+25316207..25322330DEAD/DEAH box helicase, putative, expressed
LOC_Os04g43150Os.9403.1.S1_s_at11/114+25324516..25329818Nuclear transport factor 2 domain containing protein, expressed
LOC_Os04g43160Os.16023.1.S1_at11/114+25329470..25331504expressed protein
LOC_Os04g43160Os.53881.1.S1_s_at1/114+25329470..25331504expressed protein
LOC_Os04g43170Os.5717.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43170OsAffx.4069.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43180NANA4+25339915..25340352transposon protein, putative, unclassified
LOC_Os04g43190NANA4+25342548..25343230hypothetical protein
LOC_Os04g43200Os.2694.1.S1_at11/114+25344306..25346108caleosin 2, putative, expressed
LOC_Os04g43210Os.53018.2.S1_x_at11/114+25348627..25352233Sugar transporter family protein, expressed
LOC_Os04g43220Os.27196.1.S1_x_at10/114+25354581..25360581Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g43230Os.54245.1.S1_at11/114+25361853..25363998expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4069.1.S1_at--90--6531Chr04:25332663..25332687 (25 bp)
GATTTGGTCTTCATCGATGCGTATG
LOC_Os04g43170
OsAffx.4069.1.S1_at--955--10751Chr04:25332578..25332602 (25 bp)
TTGAGATGAAAGTCCACCCTGTCCA
LOC_Os04g43170
OsAffx.4069.1.S1_at--807--7491Chr04:25332546..25332570 (25 bp)
GTGGTGGTGAACCTACACTCTGACT
LOC_Os04g43170
OsAffx.4069.1.S1_at--163--8951Chr04:25332526..25332550 (25 bp)
TGACTCGGAGCTATCTGTTGCTGGT
LOC_Os04g43170
OsAffx.4069.1.S1_at--1122--5511Chr04:25332496..25332520 (25 bp)
GAAAACCTCCTCTGTGGATAGCATT
LOC_Os04g43170
OsAffx.4069.1.S1_at--613--7951Chr04:25332481..25332505 (25 bp)
GGATAGCATTCTTCCGCTGGGCAAA
LOC_Os04g43170
OsAffx.4069.1.S1_at--58--2411Chr04:25332459..25332483 (25 bp)
AAACATGTCTCCCAGGTCTGCAGGG
LOC_Os04g43170
OsAffx.4069.1.S1_at--1139--2211Chr04:25332431..25332455 (25 bp)
ACAAGCAGCATTTCGGGCTAGCCTT
LOC_Os04g43170
OsAffx.4069.1.S1_at--89--10471Chr04:25332323..25332347 (25 bp)
TTAGCCGTAGGGACTTTGTTCTTGG
LOC_Os04g43170
OsAffx.4069.1.S1_at--37--6731Chr04:25332306..25332330 (25 bp)
GTTCTTGGCAAGCTTCTGTCGAAAT
LOC_Os04g43170
OsAffx.4069.1.S1_at--547--5491Chr04:25332280..25332304 (25 bp)
GAACATGGTCGAGCACGCGCTGGAC
LOC_Os04g43170
Target Sequence 
GATTTGGTCTTCATCGATGCGTATGACGGCGACGACATATTTCCTCGCAAGCTCTGGGACGCAGAGGGAACATTCCTCAA
GAACCTTGAGATGAAAGTCCACCCTGTCCATGGCACCGTGGTGGTGAACCTACACTCTGACTCGGAGCTATCTGTTGCTG
GTGTGGAGAAAACCTCCTCTGTGGATAGCATTCTTCCGCTGGGCAAACATGTCTCCCAGGTCTGCAGGGCGTACAAGCAG
CATTTCGGGCTAGCCTTCACAGCGGCCGTCCCTTGGCTCTGCAACATCACCCTCGTCGCCTGCCGTGACAGGGCCATAGC
AAGCGGTGCACGGCTTGGGCTTAGCCGTAGGGACTTTGTTCTTGGCAAGCTTCTGTCGAAATCGAACATGGTCGAGCACG
CGCTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis