Browse Element(s) Details


OsAffx.4086.1.S1_at

Description tigr:9632.m04278
TID=OsAffx.4086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4455011/11coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44510Os.7622.1.S1_at11/114+26128239..26129416GRAM domain-containing protein, putative, expressed
LOC_Os04g44520OsAffx.14266.1.S1_at11/114+26132105..26133160hypothetical protein
LOC_Os04g44530Os.31464.1.S1_a_at11/114+26145064..26149295expressed protein
LOC_Os04g44540Os.25216.1.A1_at11/114+26149776..26152713Mitochondrial carrier protein, expressed
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44560Os.18634.1.S1_at10/114+26156643..26160715expressed protein
LOC_Os04g44570Os.55453.1.S1_at11/114+26161182..26162454MIP family channel proteins containing protein, expressed
LOC_Os04g44580OsAffx.26461.1.S1_at11/114+26162906..26166902expressed protein
LOC_Os04g44590Os.26349.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44590OsAffx.26462.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44600Os.20306.1.S1_at11/114+26173245..26173981expressed protein
LOC_Os04g44610Os.17440.1.S1_at11/114+26176829..26182579ABC-2 type transporter family protein, expressed
LOC_Os04g44620Os.51865.1.S2_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.2.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.1.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4086.1.S1_at--246--6511Chr04:26154635..26154659 (25 bp)
GATATCTGATAATTTCCAGCTGATT
LOC_Os04g44550
OsAffx.4086.1.S1_at--204--3131Chr04:26154645..26154669 (25 bp)
AATTTCCAGCTGATTTGGGCATTCA
LOC_Os04g44550
OsAffx.4086.1.S1_at--341--4751Chr04:26154653..26154677 (25 bp)
GCTGATTTGGGCATTCAGGCTGAAG
LOC_Os04g44550
OsAffx.4086.1.S1_at--681--911Chr04:26154669..26154693 (25 bp)
AGGCTGAAGCCATGCCACTGTAGGA
LOC_Os04g44550
OsAffx.4086.1.S1_at--877--5411Chr04:26154674..26154698 (25 bp)
GAAGCCATGCCACTGTAGGAAATGT
LOC_Os04g44550
OsAffx.4086.1.S1_at--238--591Chr04:26154680..26154704 (25 bp)
ATGCCACTGTAGGAAATGTGTCTGT
LOC_Os04g44550
OsAffx.4086.1.S1_at--434--791Chr04:26154695..26154719 (25 bp)
ATGTGTCTGTGTTTCTTTCTATTAT
LOC_Os04g44550
OsAffx.4086.1.S1_at--122--7191Chr04:26154699..26154723 (25 bp)
GTCTGTGTTTCTTTCTATTATACAA
LOC_Os04g44550
OsAffx.4086.1.S1_at--1113--312Chr04:26154718..26154742 (25 bp)
ATACAAATATAAAAAGCTCCCTCAA
LOC_Os04g44550
OsAffx.4086.1.S1_at--501--9511Chr04:26154727..26154751 (25 bp)
TAAAAAGCTCCCTCAAGTTGTTCGT
LOC_Os04g44550
OsAffx.4086.1.S1_at--241--3231Chr04:26154740..26154764 (25 bp)
CAAGTTGTTCGTTGATCTAATTGAA
LOC_Os04g44550
Target Sequence 
GATATCTGATAATTTCCAGCTGATTTGGGCATTCAGGCTGAAGCCATGCCACTGTAGGAAATGTGTCTGTGTTTCTTTCT
ATTATACAAATATAAAAAGCTCCCTCAAGTTGTTCGTTGATCTAATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis