Browse Element(s) Details


OsAffx.4104.1.S1_at

Description tigr:9632.m04429
TID=OsAffx.4104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4601011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45970Os.52150.1.S1_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_x_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45980NANA4+27022063..27022636expressed protein
LOC_Os04g45990Os.48725.1.S1_at11/114+27024995..27027705YDG/SRA domain containing protein, expressed
LOC_Os04g46000OsAffx.16572.1.S1_x_at11/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46000OsAffx.16572.4.S1_x_at2/114+27033012..27035010cyclin family protein, putative
LOC_Os04g46010OsAffx.4104.1.S1_at11/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46010Os.27576.1.S1_at1/114+27037422..27039842pentatricopeptide, putative, expressed
LOC_Os04g46020Os.14573.1.S1_at11/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46020OsAffx.10931.3.S1_at3/114+27041273..27045424GATA zinc finger family protein, expressed
LOC_Os04g46030NANA4+27049237..27049893hypothetical protein
LOC_Os04g46040OsAffx.14288.1.S1_at11/114+27052758..27053127hypothetical protein
LOC_Os04g46050Os.38153.1.S1_at11/114+27056244..27063655Plasmid Maintenance Protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4104.1.S1_at--215--10431Chr04:27037968..27037992 (25 bp)
TTATCTCATGACACTCTATAGCCAC
LOC_Os04g46010
OsAffx.4104.1.S1_at--201--8171Chr04:27037932..27037956 (25 bp)
GGAAGAAGTCTACCGCGTTTGGAAT
LOC_Os04g46010
OsAffx.4104.1.S1_at--1155--10431Chr04:27037908..27037932 (25 bp)
TTGGTACAAAGCAACTTTCCCCACA
LOC_Os04g46010
OsAffx.4104.1.S1_at--271--10471Chr04:27037869..27037893 (25 bp)
TTACCAGGAGGTACTATCTGCCCTT
LOC_Os04g46010
OsAffx.4104.1.S1_at--549--471Chr04:27037854..27037878 (25 bp)
ATCTGCCCTTGTTAGGCTAGGAGAT
LOC_Os04g46010
OsAffx.4104.1.S1_at--1007--7631Chr04:27037824..27037848 (25 bp)
GGGAGCTGAACTTCTTTACGAGGAA
LOC_Os04g46010
OsAffx.4104.1.S1_at--258--1351Chr04:27037789..27037813 (25 bp)
AGAGTTCCAGTTTTGATCCTAAGAC
LOC_Os04g46010
OsAffx.4104.1.S1_at--557--911Chr04:27037731..27037755 (25 bp)
AGGCTTTGTTACCAAGGCTGAGCAA
LOC_Os04g46010
OsAffx.4104.1.S1_at--27--5591Chr04:27037655..27037679 (25 bp)
GAAATCCTTGGCACAGCATACCTGA
LOC_Os04g46010
OsAffx.4104.1.S1_at--272--5991Chr04:27037560..27037584 (25 bp)
GAGACCAAGACCCACCAATGTTGAG
LOC_Os04g46010
OsAffx.4104.1.S1_at--89--10771Chr04:27037540..27037564 (25 bp)
TTGAGAGCCTCCTTGCGAATTTCAA
LOC_Os04g46010
Target Sequence 
TTATCTCATGACACTCTATAGCCACCTCGGCAAGAAGGAAGAAGTCTACCGCGTTTGGAATTGGTACAAAGCAACTTTCC
CCACAATTCATAACCTGGGTTACCAGGAGGTACTATCTGCCCTTGTTAGGCTAGGAGATATTGAGGGAGCTGAACTTCTT
TACGAGGAATGGGCATCCAAGAGTTCCAGTTTTGATCCTAAGACTATGAACATTTTATTAGCGTGGTATGCCAGAGAAGG
CTTTGTTACCAAGGCTGAGCAAACTCTGAACAGATTTGTTGAGAAAGGTGGAAATCCAAAACCAAACACCTGGGAAATCC
TTGGCACAGCATACCTGAAGGACGGTCAATCATCTGAAGCACTGTCATGTTTGGAGAAAGCCACTGCAGTTGCAAGTCCA
AGCAAATGGAGACCAAGACCCACCAATGTTGAGAGCCTCCTTGCGAATTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis