Browse Element(s) Details


OsAffx.4178.1.S1_at

Description tigr:9632.m05347
TID=OsAffx.4178.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5500011/11cullin, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54930Os.9220.2.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54930OsAffx.26608.1.S1_x_at11/114+32452852..32459253ABC transporter family protein, expressed
LOC_Os04g54940Os.17881.1.S1_at10/114+32465478..32468508microtubule-associated EB1 family protein, putative, expressed
LOC_Os04g54950OsAffx.4177.1.S1_at11/114+32468995..32469968hypothetical protein
LOC_Os04g54960OsAffx.14421.1.S1_at10/114+32470977..32473449hypothetical protein
LOC_Os04g54970OsAffx.4217.1.S1_at11/114+32477543..32478846hypothetical protein
LOC_Os04g54980OsAffx.14422.1.S1_at10/114+32479642..32481779hypothetical protein
LOC_Os04g54990OsAffx.26609.1.S1_at11/114+32482457..32483307hypothetical protein
LOC_Os04g55000OsAffx.4178.1.S1_at11/114+32484196..32484834cullin, putative
LOC_Os04g55009NANA4+32488693..32489123NA
LOC_Os04g55020OsAffx.22848.4.S1_at2/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.3.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.4.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55030Os.17406.1.S1_at11/114+32507274..32511697Cullin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007049biological_processcell cycle
GO:0009639biological_processresponse to red or far red light
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009911biological_processpositive regulation of flower development
GO:0009960biological_processendosperm development
GO:0000151cellular_componentubiquitin ligase complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4178.1.S1_at--189--8271Chr04:32484338..32484362 (25 bp)
GGCGTGTTTACGAAGTGGTCCTCAA
LOC_Os04g55000
OsAffx.4178.1.S1_at--1150--8591Chr04:32484353..32484377 (25 bp)
TGGTCCTCAATAAACACGGCGAGCT
LOC_Os04g55000
OsAffx.4178.1.S1_at--689--2171Chr04:32484366..32484390 (25 bp)
ACACGGCGAGCTGATGTACTCGGAG
LOC_Os04g55000
OsAffx.4178.1.S1_at--154--6271Chr04:32484543..32484567 (25 bp)
GATGTACATGGAGCGGACGTTCATT
LOC_Os04g55000
OsAffx.4178.1.S1_at--367--7951Chr04:32484557..32484581 (25 bp)
GGACGTTCATTGTGACGTACCGGAA
LOC_Os04g55000
OsAffx.4178.1.S1_at--602--8931Chr04:32484569..32484593 (25 bp)
TGACGTACCGGAAGGTGTCGGTCCA
LOC_Os04g55000
OsAffx.4178.1.S1_at--1050--8651Chr04:32484717..32484741 (25 bp)
TGTGGCCGAGATGCTGACGAAGCTT
LOC_Os04g55000
OsAffx.4178.1.S1_at--352--6331Chr04:32484726..32484750 (25 bp)
GATGCTGACGAAGCTTCGCGACAAA
LOC_Os04g55000
OsAffx.4178.1.S1_at--1115--10591Chr04:32484740..32484764 (25 bp)
TTCGCGACAAAGTGTTAAGCCAGGT
LOC_Os04g55000
OsAffx.4178.1.S1_at--900--10491Chr04:32484754..32484778 (25 bp)
TTAAGCCAGGTCATGGACGCGTCGT
LOC_Os04g55000
OsAffx.4178.1.S1_at--70--9471Chr04:32484778..32484802 (25 bp)
TCTGTCGACGACTATAGTAGCGCCA
LOC_Os04g55000
Target Sequence 
GGCGTGTTTACGAAGTGGTCCTCAATAAACACGGCGAGCTGATGTACTCGGAGGTGGCGACCGCCCTGACGGCGGAGGTG
GAAGGCCTCCGCACGTCGCTCGTCGCCGTCGCGGACGGCGGCGGCGGCGGCGGAGCGTTCTTGCGGGAGCTGCTGTCCAA
GTGGCGCCGGCACACCGAGGCCGTCGCCGCCGTCCGCGACATGGTGATGTACATGGAGCGGACGTTCATTGTGACGTACC
GGAAGGTGTCGGTCCAGGAGCTCGGCGTGAAGCTCTGGCGCGACGGCGTGGTCTGCTCCGGCGACGTCATGCCGAGGCTG
GTCGAGGCGGTGCGGCGCGAGCGGGCGGCCGCCGCCGAGCCTGGCGAGCTGATGGCCGGTGTGGCCGAGATGCTGACGAA
GCTTCGCGACAAAGTGTTAAGCCAGGTCATGGACGCGTCGTCTGTCGACGACTATAGTAGCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis