Browse Element(s) Details


OsAffx.4212.1.A1_at

Description tigr:9632.m05744
TID=OsAffx.4212.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5877010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58740OsAffx.14473.1.S1_at11/114+34720167..34720562hypothetical protein
LOC_Os04g58750Os.9165.1.S1_at11/114+34723921..34730647Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os04g58760OsAffx.26659.1.S1_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58760OsAffx.26659.1.S1_x_at10/114+34731540..34732359plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os04g58770OsAffx.4212.1.A1_at10/114+34737378..34739004hypothetical protein
LOC_Os04g58770OsAffx.8714.1.S1_at1/114+34737378..34739004hypothetical protein
LOC_Os04g58780Os.20911.1.S1_at11/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58780Os.22699.1.S1_at3/114+34739546..34751031pentatricopeptide, putative, expressed
LOC_Os04g58790Os.14127.1.S1_at1/114+34752981..34753226hypothetical protein
LOC_Os04g58800Os.35576.1.S1_at11/114+34756595..34758671Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os04g58810Os.140.3.S1_x_at11/114+34761534..34762752CAF1 family ribonuclease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4212.1.A1_at--935--7351Chr04:34737652..34737676 (25 bp)
GTGACAGCCGTGTGCGCCAGTCGTC
LOC_Os04g58770
OsAffx.4212.1.A1_at--941--4411Chr04:34737667..34737691 (25 bp)
GCCAGTCGTCGTCTCCTACTGATGA
LOC_Os04g58770
OsAffx.4212.1.A1_at--663--6292Chr04:34737687..34737711 (25 bp)
GATGATTTGAGTGTCTTGTCCTTAA
LOC_Os04g58770
OsAffx.4212.1.A1_at--1162--3991NONE
CGTGAAATGGCTATTGTATCTGACA
NONE
OsAffx.4212.1.A1_at--671--6891Chr04:34738545..34738569 (25 bp)
GTATCTGACAGCTTTTGATTCGTTG
LOC_Os04g58770
OsAffx.4212.1.A1_at--61--8831Chr04:34738560..34738584 (25 bp)
TGATTCGTTGTCACCATTCCATATA
LOC_Os04g58770
OsAffx.4212.1.A1_at--189--9991Chr04:34738601..34738625 (25 bp)
TAGACCCGTTAACTTTCATACTCAC
LOC_Os04g58770
OsAffx.4212.1.A1_at--1057--10531Chr04:34738615..34738639 (25 bp)
TTCATACTCACATCAATCGATCTGA
LOC_Os04g58770
OsAffx.4212.1.A1_at--573--5831Chr04:34738643..34738835 (25 bp)
GAGCCAAATCCAACGGACGGCGGTT
LOC_Os04g58770
OsAffx.4212.1.A1_at--563--3312Chr04:34738860..34738884 (25 bp)
CACAGAGACCATACCTGGGTGGGCG
LOC_Os04g58770
OsAffx.4212.1.A1_at--838--5392Chr04:34738937..34738961 (25 bp)
GAAGCGGTGACGGTTGTCCTCCGCC
LOC_Os04g58770
Target Sequence 
GTGACAGCCGTGTGCGCCAGTCGTCGTCTCCTACTGATGATTTGAGTGTCTTGTCCTTAAATATGGTTTACGTGAAATGG
CTATTGTATCTGACAGCTTTTGATTCGTTGTCACCATTCCATATAAGAAATCGTTACTGGGTAGACCCGTTAACTTTCAT
ACTCACATCAATCGATCTGATCAGAGCCAAATCCAACGGACGGCGGTTGAGCGGGATGGGGAGGCACCAACCCACAGAGA
CCATACCTGGGTGGGCGCGACGGGACACCGGCACCCCGAATCGAGGCGGCGCCGGCGACGCTACCTGCGGAAGCGGTGAC
GGTTGTCCTCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4212.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis