Browse Element(s) Details


OsAffx.4256.1.S1_at

Description tigr:9633.m00472
TID=OsAffx.4256.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g053809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05354OsAffx.14555.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354Os.10892.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_at3/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_x_at3/115+2616872..2627073expressed protein
LOC_Os05g05354Os.16798.1.S1_at2/115+2616872..2627073expressed protein
LOC_Os05g05370OsAffx.26741.1.S1_at11/115+2630067..2634575hypothetical protein
LOC_Os05g05380OsAffx.4256.1.S1_at9/115+2643059..2644165hypothetical protein
LOC_Os05g05390OsAffx.14556.1.S1_at11/115+2650647..2657552expressed protein
LOC_Os05g05390OsAffx.26617.5.S1_x_at2/115+2650647..2657552expressed protein
LOC_Os05g05400NANA5+2661786..2662555retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g05410NANA5+2663080..2665837retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.1.S1_x_at6/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.5.S1_x_at3/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05420OsAffx.22947.3.S1_x_at2/115+2668033..2674416retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4256.1.S1_at--358--9051NONE
TGCAGTTCTCCACTCCATGGCAAGT
NONE
OsAffx.4256.1.S1_at--338--9491NONE
TCTCCACTCCATGGCAAGTCATTAT
NONE
OsAffx.4256.1.S1_at--41--1171Chr05:2643714..2643738 (25 bp)
AGTCATTATCTCAGAGACTCGGAGT
LOC_Os05g05380
OsAffx.4256.1.S1_at--465--5711Chr05:2643729..2643753 (25 bp)
GACTCGGAGTTCTGGTTTCAAGATC
LOC_Os05g05380
OsAffx.4256.1.S1_at--1110--9291Chr05:2643817..2643841 (25 bp)
TCCCCTTCTTTGAATGATTGGAGAA
LOC_Os05g05380
OsAffx.4256.1.S1_at--83--1731Chr05:2643848..2643871 (24 bp)
ACCAGTATGCTTCTGATGCTGAGGC
LOC_Os05g05380
OsAffx.4256.1.S1_at--957--8851Chr05:2643861..2644030 (25 bp)
TGATGCTGAGGCTTTAGGTGTCTAC
LOC_Os05g05380
OsAffx.4256.1.S1_at--151--8691Chr05:2644014..2644036 (23 bp)
TGAGGCTTTAGGTGTCTACGTTTTT
LOC_Os05g05380
OsAffx.4256.1.S1_at--94--2271Chr05:2644044..2644068 (25 bp)
AAATACATACTCTGTTTCATAGTAG
LOC_Os05g05380
OsAffx.4256.1.S1_at--526--8191Chr05:2644068..2644092 (25 bp)
GGAAGATGGCCCTAATACATACTCT
LOC_Os05g05380
OsAffx.4256.1.S1_at--514--8411Chr05:2644075..2644099 (25 bp)
GGCCCTAATACATACTCTGTTTCAT
LOC_Os05g05380
Target Sequence 
TGCAGTTCTCCACTCCATGGCAAGTCATTATCTCAGAGACTCGGAGTTCTGGTTTCAAGATCGATTGGGATGAGAAGAGC
AAAACAGGCACCATTTTGACATCAGCCCTTCTTTTTTGCAAACAGTCCCCTTCTTTGAATGATTGGAGAAGTGCAAACCA
GTATGCTTCTGATGCTGAGGCTTTAGGTGTCTACGTTTTTCCTTTCAAAATACATACTCTGTTTCATAGTAGGAAGATGG
CCCTAATACATACTCTGTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis