Browse Element(s) Details


OsAffx.4267.1.S1_at

Description tigr:9633.m00633
TID=OsAffx.4267.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0708011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07040Os.51192.1.A1_a_at11/115+3675928..3680375PHD finger protein, putative, expressed
LOC_Os05g07050Os.4209.1.S1_a_at3/115+3682241..3692532Pre-mRNA processing splicing factor 8, putative, expressed
LOC_Os05g07060Os.54555.1.S1_at10/115+3693797..3694910Fasciclin domain containing protein, expressed
LOC_Os05g07070Os.19023.1.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_x_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.1.S1_s_at11/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07070Os.19023.2.S1_s_at10/115+3696344..3703439Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g07080OsAffx.4267.1.S1_at11/115+3704516..3707449D-mannose binding lectin family protein
LOC_Os05g07090Os.12993.1.S1_at11/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07090Os.26897.1.S1_at3/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07090OsAffx.29424.1.S1_at2/115+3708656..3713258Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os05g07100Os.40855.5.S1_x_at2/115+3723400..3724467hypothetical protein
LOC_Os05g07109NANA5+3730076..3732121NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4267.1.S1_at--999--6431Chr05:3705285..3705309 (25 bp)
GATCATGCTGCATATTTCCCTGTGC
LOC_Os05g07080
OsAffx.4267.1.S1_at--33--1991Chr05:3705208..3705232 (25 bp)
ACTGCTTGATGATGTTAACCTGGAT
LOC_Os05g07080
OsAffx.4267.1.S1_at--374--7551Chr05:3705162..3705186 (25 bp)
GTGGCCTGCTGGTGTGTCCAAGAAA
LOC_Os05g07080
OsAffx.4267.1.S1_at--1080--2991Chr05:3705138..3705162 (25 bp)
AATGAGTCTAATCGGCCGACCATGG
LOC_Os05g07080
OsAffx.4267.1.S1_at--158--2271Chr05:3704716..3704740 (25 bp)
AAATCAGAACCATTTCGGCCTCGAT
LOC_Os05g07080
OsAffx.4267.1.S1_at--445--1752Chr10:21815063..21815087 (25 bp)
ACCTTTGTGCAAACGACGGCGAGTC
NONE
OsAffx.4267.1.S1_at--214--6572Chr10:21815019..21815043 (25 bp)
GATTGTCCCTTCACAAAGCAGGTTT
NONE
OsAffx.4267.1.S1_at--190--1012Chr10:21814989..21815013 (25 bp)
AGGATTCGAGATCGGCTTAGCCTTT
NONE
OsAffx.4267.1.S1_at--922--9091Chr05:3704585..3704609 (25 bp)
TGCTCGGTGCCATCAGAAGATCTTT
LOC_Os05g07080
OsAffx.4267.1.S1_at--886--1452Chr10:21814649..21814673 (25 bp)
AGAAGATCTTTCCTCTTGGTGGTGT
NONE
OsAffx.4267.1.S1_at--457--6751Chr05:3704548..3704572 (25 bp)
GTTCAGTCCGAAAATCAGTGCGCAA
LOC_Os05g07080
Target Sequence 
GATCATGCTGCATATTTCCCTGTGCAAGTTGCAAATGAACTTCTCGAGGGAGATGTCAGGAGCTTGCTAGATAACAAACT
GCTTGATGATGTTAACCTGGATGAGGCTGAACGAATAAGCAAGGTGGCCTGCTGGTGTGTCCAAGAAAATGAGTCTAATC
GGCCGACCATGGGCGAAGTGGTTCAAATTCTTGAAGGGAGCATAGAAAACTTTACGGTTAGTAACCAGAATTCTACTGAA
GCAAAATCAGAACCATTTCGGCCTCGATCTGTCACCTTTGTGCAAACGACGGCGAGTCCTGCTCCCACATCTTCCATGAT
TGTCCCTTCACAAAGCAGGTTTGGACAAGGATTCGAGATCGGCTTAGCCTTTCCTGCTCGGTGCCATCAGAAGATCTTTC
CTCTTGGTGGTGTTCAGTCCGAAAATCAGTGCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis