Browse Element(s) Details


OsAffx.4287.1.S1_at

Description tigr:9633.m00855
TID=OsAffx.4287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g094609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09420OsAffx.26798.1.S1_at8/115+5266074..5268258hypothetical protein
LOC_Os05g09430OsAffx.26799.1.S1_at11/115+5271925..5272683expressed protein
LOC_Os05g09440Os.9145.1.S1_at11/115+5272909..5276768NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os05g09450OsAffx.14612.1.S1_at11/115+5281260..5282687hypothetical protein
LOC_Os05g09460OsAffx.4287.1.S1_at9/115+5289032..5291296hypothetical protein
LOC_Os05g09470OsAffx.8965.1.S1_at1/115+5298616..5301279hypothetical protein
LOC_Os05g09480Os.57374.1.S1_at11/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09480OsAffx.26801.1.S1_x_at10/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09480OsAffx.18465.1.S1_at1/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09490Os.12182.1.S1_at11/115+5313098..5316239Proteasome subunit beta type 7 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4287.1.S1_at--1061--5751Chr05:5289089..5289113 (25 bp)
GACGTTGGCAGTGGTCCAACCGTTG
LOC_Os05g09460
OsAffx.4287.1.S1_at--1055--8591Chr05:5289100..5289124 (25 bp)
TGGTCCAACCGTTGGGCACAGTGGC
LOC_Os05g09460
OsAffx.4287.1.S1_at--742--5111Chr05:5289115..5289139 (25 bp)
GCACAGTGGCGTGGAGCATGCACAA
LOC_Os05g09460
OsAffx.4287.1.S1_at--823--2771Chr05:5289138..5289162 (25 bp)
AAGAGCGGCTCATACTGGTTCAACA
LOC_Os05g09460
OsAffx.4287.1.S1_at--787--311Chr05:5289149..5289173 (25 bp)
ATACTGGTTCAACAGCAGCCGGCCG
LOC_Os05g09460
OsAffx.4287.1.S1_at--873--3771NONE
CTCTCCAGCGGGACGGCGTTGCTTG
NONE
OsAffx.4287.1.S1_at--697--10731Chr05:5290387..5290411 (25 bp)
TTGCTTGAGGCCACGGAGAGTATTG
LOC_Os05g09460
OsAffx.4287.1.S1_at--349--6871Chr05:5290406..5290430 (25 bp)
GTATTGACGGTGATGAATCTCATGC
LOC_Os05g09460
OsAffx.4287.1.S1_at--379--5251Chr05:5290420..5290444 (25 bp)
GAATCTCATGCGCAGTTTCAATGCG
LOC_Os05g09460
OsAffx.4287.1.S1_at--135--1211Chr05:5290433..5290457 (25 bp)
AGTTTCAATGCGCAGTTTCAAGATG
LOC_Os05g09460
OsAffx.4287.1.S1_at--36--2911NONE
AAGGTTACCGAGCTTATTTAATGCA
NONE
Target Sequence 
GACGTTGGCAGTGGTCCAACCGTTGGGCACAGTGGCGTGGAGCATGCACAAGAGCGGCTCATACTGGTTCAACAGCAGCC
GGCCGGCATCCTCTCCCCCTCTCCAGCGGGACGGCGTTGCTTGAGGCCACGGAGAGTATTGACGGTGATGAATCTCATGC
GCAGTTTCAATGCGCAGTTTCAAGATGCAAAATTTGATCAAATTCCAAAGAGAAGTAAAAGGTTACCGAGCTTATTTAAT
GCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis