Browse Element(s) Details


OsAffx.4303.1.S1_at

Description tigr:9633.m01011
TID=OsAffx.4303.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pectinesterase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1147011/11hypothetical protein
LOC_Os01g280001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11428Os.52834.1.S1_at8/115+6447454..6455768expressed protein
LOC_Os05g11428Os.55138.1.S1_x_at1/115+6447454..6455768expressed protein
LOC_Os05g11428OsAffx.13191.1.A1_at1/115+6447454..6455768expressed protein
LOC_Os05g11428Os.15238.1.S1_at1/115+6447454..6455768expressed protein
LOC_Os05g11442NANA5+6457140..6457629NA
LOC_Os05g11460OsAffx.4302.1.S1_at4/115+6463368..6465542hypothetical protein
LOC_Os05g11470OsAffx.4303.1.S1_at11/115+6469205..6470299hypothetical protein
LOC_Os05g11479NANA5+6471649..6473302NA
LOC_Os05g11490OsAffx.26835.1.S1_at11/115+6486570..6487084hypothetical protein
LOC_Os05g11500OsAffx.14638.1.S1_at11/115+6491805..6492578hypothetical protein
LOC_Os05g11510Os.27817.1.A1_at11/115+6494060..6496594B-box zinc finger family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4303.1.S1_at--867--9491Chr05:6469301..6469325 (25 bp)
TCTCCAGTAGAGAGGGCGGCGACAA
LOC_Os05g11470
OsAffx.4303.1.S1_at--735--4691Chr05:6469316..6469654 (25 bp)
GCGGCGACAACGAGTTCTCGTCGAT
LOC_Os05g11470
OsAffx.4303.1.S1_at--611--2571Chr05:6469642..6469662 (21 bp)
AACGAGTTCTCGTCGATGCTCGGCA
LOC_Os05g11470
OsAffx.4303.1.S1_at--904--9491Chr05:6469645..6469669 (25 bp)
TCTCGTCGATGCTCGGCAGCCTCAG
LOC_Os05g11470
OsAffx.4303.1.S1_at--85--4072Chr05:6469695..6469719 (25 bp)
CGAGGACGGCATGCCGACGTGGATC
LOC_Os05g11470
OsAffx.4303.1.S1_at--396--1911Chr05:6469711..6469735 (25 bp)
ACGTGGATCGCCGAGGAATTCGAGC
LOC_Os05g11470
OsAffx.4303.1.S1_at--875--6371Chr05:6469716..6469740 (25 bp)
GATCGCCGAGGAATTCGAGCCGAAC
LOC_Os05g11470
OsAffx.4303.1.S1_at--169--11Chr05:6469722..6469746 (25 bp)
CGAGGAATTCGAGCCGAACGTGACG
LOC_Os05g11470
OsAffx.4303.1.S1_at--280--7531Chr05:6470158..6470182 (25 bp)
GTGGAAGGAGTACTCAATGACCATC
LOC_Os05g11470
OsAffx.4303.1.S1_at--1162--6991Chr05:6470167..6470191 (25 bp)
GTACTCAATGACCATCTTTGTGCAG
LOC_Os05g11470
OsAffx.4303.1.S1_at--368--10251Chr05:6470183..6470207 (25 bp)
TTTGTGCAGAATGAGCTCGGCGCGT
LOC_Os05g11470
Target Sequence 
TCTCCAGTAGAGAGGGCGGCGACAACGAGTTCTCGTCGATGCTCGGCAGCCTCAGCATCGGGCGGCGGCTGCTCGATCGC
CGAGGACGGCATGCCGACGTGGATCGCCGAGGAATTCGAGCCGAACGTGACGGTGGCGCCGCACCCGGACCTGGAGAAGT
TCACGGACAAGGTGGTGCTCCAGAACTGCTTGATCCAGCTACAGAAGCCGATGGGGAACCAGGTCGCGGGAGGGACGGGG
CTGCACAACCGCACTGTGGCGCCGCACCCGGATCTGGAGAAGGTGAATCTGACGTACATGGCGCGGCCGTGGAAGGAGTA
CTCAATGACCATCTTTGTGCAGAATGAGCTCGGCGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis