Browse Element(s) Details


OsAffx.4304.1.S1_at

Description tigr:9633.m01018
TID=OsAffx.4304.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1154011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11490OsAffx.26835.1.S1_at11/115+6486570..6487084hypothetical protein
LOC_Os05g11500OsAffx.14638.1.S1_at11/115+6491805..6492578hypothetical protein
LOC_Os05g11510Os.27817.1.A1_at11/115+6494060..6496594B-box zinc finger family protein, expressed
LOC_Os05g11520OsAffx.31811.3.S1_x_at11/115+6501246..6502820Zinc knuckle family protein
LOC_Os05g11530OsAffx.31811.5.S1_at4/115+6505608..6506134hypothetical protein
LOC_Os05g11540OsAffx.4304.1.S1_at11/115+6509075..6509818hypothetical protein
LOC_Os05g11550OsAffx.4304.1.A1_at11/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11550Os.19558.1.S1_at10/115+6509109..6516665Serine/threonine protein phosphatase 5, putative, expressed
LOC_Os05g11560OsAffx.26836.2.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560Os.12980.1.S1_s_at11/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11560OsAffx.26836.1.S1_at9/115+6519140..6524124aquaporin NIP-type, putative, expressed
LOC_Os05g11570Os.57341.1.S1_at4/115+6526085..6527292NLI interacting factor-like phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4304.1.S1_at--415--3131Chr05:6509763..6509787 (25 bp)
AATTAGGTGCAGGAATGAGGAAGAT
LOC_Os05g11540
OsAffx.4304.1.S1_at--931--2871Chr05:6509732..6509756 (25 bp)
AAGGGAAACATGGTCTAAATATCTC
LOC_Os05g11540
OsAffx.4304.1.S1_at--656--7811Chr05:6509721..6509745 (25 bp)
GGTCTAAATATCTCCACATTGGCAT
LOC_Os05g11540
OsAffx.4304.1.S1_at--1156--231Chr05:6509714..6509738 (25 bp)
ATATCTCCACATTGGCATATTTCAG
LOC_Os05g11540
OsAffx.4304.1.S1_at--63--8291Chr05:6509701..6509725 (25 bp)
GGCATATTTCAGAAGATGGGAACTT
LOC_Os05g11540
OsAffx.4304.1.S1_at--1096--6231Chr05:6509691..6509711 (21 bp)
GATGGGAACTTGGTGTGGTATCAAA
LOC_Os05g11540
OsAffx.4304.1.S1_at--466--7991Chr05:6509296..6509320 (25 bp)
GGCAGGGAAACCGAAACATTACGTG
LOC_Os05g11540
OsAffx.4304.1.S1_at--866--2611Chr05:6509288..6509312 (25 bp)
AACCGAAACATTACGTGCAGCCTGG
LOC_Os05g11540
OsAffx.4304.1.S1_at--458--4091Chr05:6509285..6509309 (25 bp)
CGAAACATTACGTGCAGCCTGGAGG
LOC_Os05g11540
OsAffx.4304.1.S1_at--870--1451Chr05:6509259..6509283 (25 bp)
AGAAGGGAGCCGAGGCAGCGTCGTG
LOC_Os05g11540
OsAffx.4304.1.S1_at--131--8431Chr05:6509236..6509260 (25 bp)
TGGCGCGGCCCGAACCAACGAAGCG
LOC_Os05g11540
Target Sequence 
AATTAGGTGCAGGAATGAGGAAGATAAGAAAAAGGGAAACATGGTCTAAATATCTCCACATTGGCATATTTCAGAAGATG
GGAACTTGGTGTGGTATCAAAAAGGAGGGCAGGGAAACCGAAACATTACGTGCAGCCTGGAGGGAGAAGGGAGCCGAGGC
AGCGTCGTGGCGCGGCCCGAACCAACGAAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis