Browse Element(s) Details


OsAffx.4314.1.S1_at

Description tigr:9633.m01110
TID=OsAffx.4314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1244011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12380OsAffx.14658.1.S1_at11/115+7103269..7106467expressed protein
LOC_Os05g12390OsAffx.16290.1.S1_at11/115+7110340..7111502hypothetical protein
LOC_Os05g12400Os.49997.1.S1_at11/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12400Os.28427.2.S1_x_at2/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.1.S1_x_at4/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.2.S1_x_at2/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410OsAffx.26865.1.S1_x_at1/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12420OsAffx.14659.1.S1_at10/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.3.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420Os.27455.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12430NANA5+7124862..7125942retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12440OsAffx.4314.1.S1_at11/115+7128977..7129381expressed protein
LOC_Os05g12450OsAffx.26856.1.S1_at11/115+7131761..7133233UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g12460Os.53011.1.S1_at10/115+7137519..7139032expressed protein
LOC_Os05g12460Os.53011.1.S1_x_at10/115+7137519..7139032expressed protein
LOC_Os05g12474Os.53750.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474Os.35613.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_s_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_at3/115+7140943..7147653expressed protein
LOC_Os05g12490Os.52122.1.S1_at11/115+7150499..7155887transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4314.1.S1_at--100--3971Chr05:7129089..7129113 (25 bp)
CGGAGGAGAAGGATGCGCGCGTCGA
LOC_Os05g12440
OsAffx.4314.1.S1_at--277--931Chr05:7129024..7129048 (25 bp)
AGGCAGATCCGCGTCCTCGAGTTGC
LOC_Os05g12440
OsAffx.4314.1.S1_at--984--5031Chr05:7129022..7129046 (25 bp)
GCAGATCCGCGTCCTCGAGTTGCAG
LOC_Os05g12440
OsAffx.4314.1.S1_at--941--1271Chr05:7129020..7129044 (25 bp)
AGATCCGCGTCCTCGAGTTGCAGAT
LOC_Os05g12440
OsAffx.4314.1.S1_at--1115--6371Chr05:7129019..7129043 (25 bp)
GATCCGCGTCCTCGAGTTGCAGATT
LOC_Os05g12440
OsAffx.4314.1.S1_at--109--551Chr05:7129018..7129042 (25 bp)
ATCCGCGTCCTCGAGTTGCAGATTC
LOC_Os05g12440
OsAffx.4314.1.S1_at--659--9291Chr05:7129017..7129041 (25 bp)
TCCGCGTCCTCGAGTTGCAGATTCA
LOC_Os05g12440
OsAffx.4314.1.S1_at--1158--4211Chr05:7129016..7129040 (25 bp)
CCGCGTCCTCGAGTTGCAGATTCAG
LOC_Os05g12440
OsAffx.4314.1.S1_at--460--4151Chr05:7129015..7129039 (25 bp)
CGCGTCCTCGAGTTGCAGATTCAGG
LOC_Os05g12440
OsAffx.4314.1.S1_at--742--4651Chr05:7129014..7129038 (25 bp)
GCGTCCTCGAGTTGCAGATTCAGGC
LOC_Os05g12440
OsAffx.4314.1.S1_at--551--7251Chr05:7129012..7129036 (25 bp)
GTCCTCGAGTTGCAGATTCAGGCCG
LOC_Os05g12440
Target Sequence 
CGGAGGAGAAGGATGCGCGCGTCGAGGAGCTCGTGATCGCGGCGGCGGAGGCGGCGGCGAAGCGCAGGCAGATCCGCGTC
CTCGAGTTGCAGATTCAGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis