Browse Element(s) Details


OsAffx.4326.1.S1_at

Description tigr:9633.m01171
TID=OsAffx.4326.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1355011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13520Os.7232.1.S1_at10/115+7472015..7477633ABC-2 type transporter family protein, expressed
LOC_Os05g13530OsAffx.24469.1.S1_x_at1/115+7478600..7479155hypothetical protein
LOC_Os05g13540OsAffx.4325.1.S1_at11/115+7487913..7489303hypothetical protein
LOC_Os05g13550OsAffx.4326.1.S1_at11/115+7498227..7498694hypothetical protein
LOC_Os05g13560NANA5+7500671..7500967hypothetical protein
LOC_Os05g13570OsAffx.19542.3.S1_x_at7/115+7509039..7511546retrotransposon protein, putative, unclassified
LOC_Os05g13580Os.5101.1.S1_at11/115+7512956..7513896EF hand family protein, expressed
LOC_Os05g13590OsAffx.26866.1.S1_at11/115+7515488..7519847hypothetical protein
LOC_Os05g13590OsAffx.14673.1.S1_at10/115+7515488..7519847hypothetical protein
LOC_Os05g13600NANA5+7520740..7522875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.1.S1_x_at9/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.2.S1_x_at7/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.3.S1_x_at6/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13610OsAffx.22947.5.S1_x_at3/115+7523385..7527101retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4326.1.S1_at--763--4691Chr05:7498562..7498586 (25 bp)
GCGGCTGTGGATATCCTCGTCTTCG
LOC_Os05g13550
OsAffx.4326.1.S1_at--239--4731Chr05:7498559..7498583 (25 bp)
GCTGTGGATATCCTCGTCTTCGCCG
LOC_Os05g13550
OsAffx.4326.1.S1_at--782--4691Chr05:7498523..7498547 (25 bp)
GCGGCTGCTCGGTGCATGCAAGATT
LOC_Os05g13550
OsAffx.4326.1.S1_at--202--8331Chr05:7498521..7498545 (25 bp)
GGCTGCTCGGTGCATGCAAGATTCT
LOC_Os05g13550
OsAffx.4326.1.S1_at--1119--9071Chr05:7498518..7498542 (25 bp)
TGCTCGGTGCATGCAAGATTCTCGA
LOC_Os05g13550
OsAffx.4326.1.S1_at--174--3791Chr05:7498516..7498540 (25 bp)
CTCGGTGCATGCAAGATTCTCGAAT
LOC_Os05g13550
OsAffx.4326.1.S1_at--802--7771Chr05:7498513..7498537 (25 bp)
GGTGCATGCAAGATTCTCGAATTTT
LOC_Os05g13550
OsAffx.4326.1.S1_at--158--9011Chr05:7498507..7498531 (25 bp)
TGCAAGATTCTCGAATTTTCCCTCC
LOC_Os05g13550
OsAffx.4326.1.S1_at--147--1251Chr05:7498503..7498527 (25 bp)
AGATTCTCGAATTTTCCCTCCCTCA
LOC_Os05g13550
OsAffx.4326.1.S1_at--314--3351Chr05:7498460..7498484 (25 bp)
CACCCTTCTTCTCGCGGAGTTCTTG
LOC_Os05g13550
OsAffx.4326.1.S1_at--737--10271Chr05:7498430..7498454 (25 bp)
TTTGCCGCCGGCAGAATCGAGCCTC
LOC_Os05g13550
Target Sequence 
GCGGCTGTGGATATCCTCGTCTTCGCCGTCACGGCCGCGGCGGCTGCTCGGTGCATGCAAGATTCTCGAATTTTCCCTCC
CTCACTCCCTCGATCGGTCTCTCACCCTTCTTCTCGCGGAGTTCTTGGTGGCTTTGCCGCCGGCAGAATCGAGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis