Browse Element(s) Details


OsAffx.4341.1.S1_at

Description tigr:9633.m01317
TID=OsAffx.4341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1497011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14920OsAffx.14701.1.S1_at11/115+8451292..8451924hypothetical protein
LOC_Os05g14930OsAffx.26896.1.S1_at11/115+8454704..8457403expressed protein
LOC_Os05g14940Os.7726.1.S1_at4/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14940OsAffx.26780.1.S1_at1/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14950OsAffx.26897.1.S1_at11/115+8461716..8463394hypothetical protein
LOC_Os05g14960OsAffx.26898.1.S1_at11/115+8467470..8468034hypothetical protein
LOC_Os05g14970OsAffx.4341.1.S1_at11/115+8471366..8473983hypothetical protein
LOC_Os05g14980OsAffx.4342.1.S1_at6/115+8476843..8480270hypothetical protein
LOC_Os05g14990NANA5+8486485..8486691hypothetical protein
LOC_Os05g15000OsAffx.4343.1.S1_at11/115+8488326..8488820hypothetical protein
LOC_Os05g15020OsAffx.14702.1.S1_at11/115+8493775..8494323hypothetical protein
LOC_Os05g15030OsAffx.8338.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15030OsAffx.22240.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15030OsAffx.10020.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4341.1.S1_at--732--6751Chr05:8472442..8472466 (25 bp)
GTTAAGAAGTTGTACCACATCTTCC
LOC_Os05g14970
OsAffx.4341.1.S1_at--751--3551Chr05:8472459..8472479 (21 bp)
CATCTTCCTTGCCAACAGTGGAGAT
LOC_Os05g14970
OsAffx.4341.1.S1_at--611--1751Chr05:8473503..8473527 (25 bp)
ACCTCCAAAACCAGCTGGTCTGAAG
LOC_Os05g14970
OsAffx.4341.1.S1_at--133--3911Chr05:8473517..8473541 (25 bp)
CTGGTCTGAAGAAGTCCTTGGTGGA
LOC_Os05g14970
OsAffx.4341.1.S1_at--576--6191Chr05:8473566..8473590 (25 bp)
GAGGAAACATCTAGCAGCTCTGCTA
LOC_Os05g14970
OsAffx.4341.1.S1_at--876--4591Chr05:8473610..8473634 (25 bp)
GCGACAATTTGGTTGATGCAGATCT
LOC_Os05g14970
OsAffx.4341.1.S1_at--291--6431Chr05:8473630..8473654 (25 bp)
GATCTTTTTTCTAATGTCACATCTG
LOC_Os05g14970
OsAffx.4341.1.S1_at--927--8851Chr05:8473659..8473683 (25 bp)
TGATGAACTGGCGAAGAAGCTCAAG
LOC_Os05g14970
OsAffx.4341.1.S1_at--311--3711Chr05:8473778..8473802 (25 bp)
CTAGCTCCCTCAAAGACTTCAATGA
LOC_Os05g14970
OsAffx.4341.1.S1_at--306--191Chr05:8473808..8473832 (25 bp)
ATTTCAATGATGTAGTGTCCACGGC
LOC_Os05g14970
OsAffx.4341.1.S1_at--148--751Chr05:8473817..8473841 (25 bp)
ATGTAGTGTCCACGGCTTTCAAGAA
LOC_Os05g14970
Target Sequence 
GTTAAGAAGTTGTACCACATCTTCCTTGCCAACAGTGGAGATGAGGAAACTGTATCAGAGGCAAGGGAAAGCAATAATTC
TGAAATGCATAATGATGAAGAAAGCAAACCTCCAAAACCAGCTGGTCTGAAGAAGTCCTTGGTGGAGAAAAATGATGAGC
TATCTGAAGAGAGGAAACATCTAGCAGCTCTGCTATCCCTTCTTGTGGTGATATGCGACAATTTGGTTGATGCAGATCTT
TTTTCTAATGTCACATCTGTGAATGATGAACTGGCGAAGAAGCTCAAGAAGATAATAGAAGCAAATAATGAAAACACAGC
TGACTGTCTGAGAATAGTGAAACTTACCTGTCAGGTGGTTATAGCGATAATTCATCTCAAACCTAGCTCCCTCAAAGACT
TCAATGAAAGTAATTTCAATGATGTAGTGTCCACGGCTTTCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis