Browse Element(s) Details


OsAffx.4351.1.S1_at

Description tigr:9633.m01413
TID=OsAffx.4351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1590011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15850OsAffx.26914.1.S1_at11/115+8927584..8928656Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15860NANA5+8931006..8933564retrotransposon protein, putative, unclassified
LOC_Os05g15870OsAffx.26915.1.S1_at10/115+8934595..8937329hypothetical protein
LOC_Os05g15880Os.53670.1.S1_at11/115+8938717..8939867Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15890Os.10835.1.S1_at11/115+8945423..8952609helicase, putative, expressed
LOC_Os05g15900OsAffx.4351.1.S1_at11/115+8953030..8953676hypothetical protein
LOC_Os05g15910OsAffx.14715.1.S1_at10/115+8954254..8956660hypothetical protein
LOC_Os05g15920NANA5+8961095..8962226Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15930OsAffx.14716.1.S1_at11/115+8963427..8969481transposon protein, putative, unclassified, expressed
LOC_Os05g15940OsAffx.18662.1.S1_at1/115+8971553..8980791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15940Os.38751.1.A1_at1/115+8971553..8980791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15940OsAffx.27810.1.S1_x_at1/115+8971553..8980791retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4351.1.S1_at--242--551Chr05:8953587..8953611 (25 bp)
ATCCCTCGCGGCTAGTGAGCTTCGG
LOC_Os05g15900
OsAffx.4351.1.S1_at--226--5811Chr05:8953480..8953501 (22 bp)
GACGCGAGCTTCTCCGGTGGAAATC
LOC_Os05g15900
OsAffx.4351.1.S1_at--491--2271Chr05:8953460..8953484 (25 bp)
AAATCGAGCGATGCGACAGCGGGTC
LOC_Os05g15900
OsAffx.4351.1.S1_at--776--7691Chr05:8953440..8953464 (25 bp)
GGGTCGAAGCGGCAACAAACTCAGC
LOC_Os05g15900
OsAffx.4351.1.S1_at--969--8351Chr05:8953384..8953408 (25 bp)
GGCGGATCTGGCGACATCAGCACCT
LOC_Os05g15900
OsAffx.4351.1.S1_at--334--3491Chr05:8953298..8953322 (25 bp)
CAGGCGACGAGCTCAGGGCAGATCT
LOC_Os05g15900
OsAffx.4351.1.S1_at--1095--9631Chr05:8953286..8953310 (25 bp)
TCAGGGCAGATCTAGCAGCTCAGCA
LOC_Os05g15900
OsAffx.4351.1.S1_at--790--10011Chr05:8953274..8953298 (25 bp)
TAGCAGCTCAGCATCGATGGTGCCT
LOC_Os05g15900
OsAffx.4351.1.S1_at--685--5731Chr05:8953230..8953254 (25 bp)
GACTGGAGACGGGTTCTGCACCTGC
LOC_Os05g15900
OsAffx.4351.1.S1_at--606--9491Chr05:8953082..8953106 (25 bp)
TCTGCGCGCTTTTTTCTGACAAAAC
LOC_Os05g15900
OsAffx.4351.1.S1_at--525--2551Chr05:8953060..8953084 (25 bp)
AACTGATGAGACTCTTTGTACCTGG
LOC_Os05g15900
Target Sequence 
ATCCCTCGCGGCTAGTGAGCTTCGGGCTGGTCCGACGCGAGCTTCTCCGGTGGAAATCGAGCGATGCGACAGCGGGTCGA
AGCGGCAACAAACTCAGCACCGTGTGCGCGTGGATGGCCATGAGCTCGGGGCGGATCTGGCGACATCAGCACCTCCTCCT
CGCCAGCATGGGAAAGGAGCTCAATGCAAAGCTGGCGGCGTCGACAGCGATGGTGCAGGCGACGAGCTCAGGGCAGATCT
AGCAGCTCAGCATCGATGGTGCCTCCTCCTCGCCGGCGGGGGAGACTGGAGACGGGTTCTGCACCTGCCGCTACCAACGT
CGCTTCCTCGCCAGTGCTGGCGTTGCCCTGTCGTCCTCATCGATGCCGGCAAGCCCCTCCCCTCTCCGGCAGTGTCTTCC
TCTCTCTCCCCCCACTCTTCGAGTTCCACTCTCTGCGCGCTTTTTTCTGACAAAACTGATGAGACTCTTTGTACCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis