Browse Element(s) Details


OsAffx.4387.1.S1_at

Description tigr:9633.m01891
TID=OsAffx.4387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g478601/11Adenylate cyclase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47820OsAffx.12541.1.S1_at6/112+29247356..29249090hypothetical protein
LOC_Os02g47840Os.16068.1.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47840Os.16068.3.S1_at11/112+29252696..29259628expressed protein
LOC_Os02g47830Os.16068.2.S1_at11/112+29253460..29254535expressed protein
LOC_Os02g47850Os.33025.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47850Os.10852.1.S1_s_at11/112+29264187..29268774carbamoyl-phosphate synthase, small subunit family protein, expressed
LOC_Os02g47860Os.5993.1.S1_at11/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47860OsAffx.4387.1.S1_at1/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47870Os.11012.1.S1_at8/112+29279108..29281654RING-box protein 1, putative, expressed
LOC_Os02g47880Os.8038.1.S1_at11/112+29281838..29285765Kinesin light chain, putative, expressed
LOC_Os02g47890Os.54767.1.S1_at11/112+29288705..29293635expressed protein
LOC_Os02g47900OsAffx.24772.1.S1_x_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900Os.47321.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900OsAffx.24772.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0004845molecular_functionuracil phosphoribosyltransferase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4387.1.S1_at--977--10133Chr08:6612013..6612034 (22 bp)
TATGCTGAAATATTCCAGGATCTTC
NONE
OsAffx.4387.1.S1_at--276--232Chr05:12148856..12148880 (25 bp)
ATATTCCAGGATCTTCATTCTTCAG
NONE
OsAffx.4387.1.S1_at--406--91Chr05:12148858..12148882 (25 bp)
ATTCCAGGATCTTCATTCTTCAGAA
NONE
OsAffx.4387.1.S1_at--208--7971Chr05:12148864..12148888 (25 bp)
GGATCTTCATTCTTCAGAAGGGAAT
NONE
OsAffx.4387.1.S1_at--856--8611Chr05:12148895..12148919 (25 bp)
TGGTGTAGTCTCACCTGAGATGCCA
NONE
OsAffx.4387.1.S1_at--1119--9511Chr05:12148903..12148927 (25 bp)
TCTCACCTGAGATGCCACCGAATAT
NONE
OsAffx.4387.1.S1_at--274--6031Chr05:12148911..12148935 (25 bp)
GAGATGCCACCGAATATTTATTTGA
NONE
OsAffx.4387.1.S1_at--590--4411Chr05:12148916..12148940 (25 bp)
GCCACCGAATATTTATTTGACCTTG
NONE
OsAffx.4387.1.S1_at--127--191Chr05:12148930..12148954 (25 bp)
ATTTGACCTTGAGATTCCCTGTTAC
NONE
OsAffx.4387.1.S1_at--21--5851Chr05:12148934..12148958 (25 bp)
GACCTTGAGATTCCCTGTTACTGAT
NONE
OsAffx.4387.1.S1_at--694--6051Chr05:12148940..12148964 (25 bp)
GAGATTCCCTGTTACTGATTCACAG
NONE
Target Sequence 
TATGCTGAAATATTCCAGGATCTTCATTCTTCAGAAGGGAATAGATCTTGGTGTAGTCTCACCTGAGATGCCACCGAATA
TTTATTTGACCTTGAGATTCCCTGTTACTGATTCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis