Browse Element(s) Details


OsAffx.4408.1.S1_at

Description tigr:9633.m02116
TID=OsAffx.4408.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2380010/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23750Os.10827.1.S1_x_at10/115+13566799..13570504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23750Os.46055.2.S1_x_at5/115+13566799..13570504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23760NANA5+13571224..13571676hypothetical protein
LOC_Os05g23770OsAffx.25936.1.S1_s_at9/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.7.S1_s_at8/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.2.S1_x_at6/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.5.S1_x_at2/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23780OsAffx.14794.1.S1_at11/115+13578265..13578921SRF-type transcription factor family protein
LOC_Os05g23790OsAffx.14795.1.S1_at11/115+13585280..13588875retrotransposon, putative, centromere-specific, expressed
LOC_Os05g23800OsAffx.4408.1.S1_at10/115+13590328..13594018RNA recognition motif family protein
LOC_Os05g23810OsAffx.30487.1.S1_at3/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810Os.5711.1.S1_at2/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23810OsAffx.30488.1.S1_at1/115+13603340..13608640retrotransposon protein, putative, unclassified
LOC_Os05g23820OsAffx.26988.1.S1_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23820OsAffx.26988.1.S1_x_at11/115+13612408..13613059retrotransposon, putative, centromere-specific
LOC_Os05g23830OsAffx.14829.1.S1_x_at2/115+13618392..13620045endo-1,4-beta-xylanase, putative
LOC_Os05g23830OsAffx.6363.1.S1_at1/115+13618392..13620045endo-1,4-beta-xylanase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4408.1.S1_at--1155--2771Chr05:13593328..13593352 (25 bp)
AAGAGATGCTCTTTCTGCGTCGAAG
LOC_Os05g23800
OsAffx.4408.1.S1_at--635--6191NONE
GAGGAATGCTCCACTACACGCTTTT
NONE
OsAffx.4408.1.S1_at--931--7651Chr05:13590791..13590815 (25 bp)
GGGATCCGGATACTGAGTTCTGCAA
LOC_Os05g23800
OsAffx.4408.1.S1_at--860--8871Chr05:13590731..13590755 (25 bp)
TGATGTGCCCCTACAACTATCTTTC
LOC_Os05g23800
OsAffx.4408.1.S1_at--483--6771Chr05:13590641..13590665 (25 bp)
GTTACAAGTGCTCGCGGCACAGAGA
LOC_Os05g23800
OsAffx.4408.1.S1_at--126--2471Chr05:13590537..13590561 (25 bp)
AACAACCTGTCGGAGTTGTGCCCAC
LOC_Os05g23800
OsAffx.4408.1.S1_at--284--3891Chr05:13590474..13590498 (25 bp)
CTGTGGATGTGGTACGTCCCGACGC
LOC_Os05g23800
OsAffx.4408.1.S1_at--234--2891Chr05:13590429..13590453 (25 bp)
AAGGGATTCGGCTGCGTCGTGTTCC
LOC_Os05g23800
OsAffx.4408.1.S1_at--143--8811Chr05:13590410..13590434 (25 bp)
TGTTCCAGCGACATCGGCACGCGGA
LOC_Os05g23800
OsAffx.4408.1.S1_at--1016--8551Chr05:13590377..13590401 (25 bp)
TGGAGGCGCTCAACTGCTGGGAATT
LOC_Os05g23800
OsAffx.4408.1.S1_at--223--1991Chr05:13590365..13590389 (25 bp)
ACTGCTGGGAATTCGGTGGCCGCAA
LOC_Os05g23800
Target Sequence 
AAGAGATGCTCTTTCTGCGTCGAAGAAAGAGTAAATGGGAGCAACAACAGGAGGAGGTAGAATTGTTCTCAGAAGAGGAG
GAATGCTCCACTACACGCTTTTGGAGGGATCCGGATACTGAGTTCTGCAACATCTGTGGAGACGACAAGGGAAACCATCT
GGAGCTGATGTGCCCCTACAACTATCTTTCCCCGGCTGCGTACTTCCCATGCAGAGCGCGGCTCGCTCTCTGGGGCAACT
ACACAACCACGCTCCGTTACAAGTGCTCGCGGCACAGAGAGGAAGAGCAAAGCGAGCCCCCGATGCACGACGAAGCGAAC
GCGAGGCGTCTCGGGTTCCTGCGGTGCCTCGTCCGCGTGAACAACCTGTCGGAGTTGTGCCCACCGGAGCAGCTCGTTGA
GCTGTTCGGCCGGTTCGGGCCGCTGTGGATGTGGTACGTCCCGACGCGAGGCTCCGGGGGGACATGCAAGGGATTCGGCT
GCGTCGTGTTCCAGCGACATCGGCACGCGGAGGAGGCCGTGGAGGCGCTCAACTGCTGGGAATTCGGTGGCCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis