Browse Element(s) Details


OsAffx.4432.1.S1_at

Description tigr:9633.m02339
TID=OsAffx.4432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2594011/11hypothetical protein
LOC_Os06g509001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g25920Os.51741.1.S1_at3/115+14999892..15000119hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_x_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_x_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25950Os.37008.1.S1_at3/115+15006872..15008055expressed protein
LOC_Os05g25960OsAffx.27019.2.S1_at11/115+15011800..15013503No apical meristem protein
LOC_Os05g25974Os.21300.1.S1_at11/115+15014135..15017030expressed protein
LOC_Os05g25974Os.21300.2.S1_x_at8/115+15014135..15017030expressed protein
LOC_Os05g25990NANA5+15018231..15019229hypothetical protein
LOC_Os05g26000NANA5+15020805..15029085retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4432.1.S1_at--615--4252Chr05:15004658..15004682 (25 bp)
CCGGATATATATCATCCCTCAATTT
LOC_Os05g25940
OsAffx.4432.1.S1_at--747--10196Chr12:4161093..4161203 (25 bp)
TATATATCATCCCTCAATTTACAAA
NONE
OsAffx.4432.1.S1_at--656--2310Chr12:4161186..4161206 (21 bp)
ATATCATCCCTCAATTTACAAAACC
NONE
OsAffx.4432.1.S1_at--286--4252Chr06:12213409..12213433 (25 bp)
CCGGATCACTTTGGGTCCTTAGGCG
NONE
OsAffx.4432.1.S1_at--400--6452Chr06:12213412..12213433 (22 bp)
GATCACTTTGGGTCCTTAGGCGATA
NONE
OsAffx.4432.1.S1_at--453--9672Chr06:12213414..12213433 (20 bp)
TCACTTTGGGTCCTTAGGCGATAAT
NONE
OsAffx.4432.1.S1_at--631--2031Chr05:15004696..15005019 (25 bp)
ACTTTGGGTCCTTAGGCGATAATGA
LOC_Os05g25940
OsAffx.4432.1.S1_at--366--10211Chr05:15004698..15005021 (25 bp)
TTTGGGTCCTTAGGCGATAATGAGG
LOC_Os05g25940
OsAffx.4432.1.S1_at--697--133Chr06:30799544..30799568 (25 bp)
ATTAATGGAGTTTGTGAGGTGCAGT
LOC_Os06g50900
OsAffx.4432.1.S1_at--306--1571Chr05:15005115..15005139 (25 bp)
AGCTAGGGCTGCTGCTATCGACGGT
LOC_Os05g25940
OsAffx.4432.1.S1_at--54--1491Chr05:15005141..15005165 (25 bp)
AGCACGCTGGAGACGTTGGGAAGTG
LOC_Os05g25940
Target Sequence 
CCGGATATATATCATCCCTCAATTTACAAAACCGGATCACTTTGGGTCCTTAGGCGATAATGAGGAGGATGATGGGATTA
ATGGAGTTTGTGAGGTGCAGTTAGAGGTGGAAAGGAAGGAGGGGGGCAACACGCGGGTGGAGATCTACTGCGCGGGGAAG
CTAGGGCTGCTGCTATCGACGGTGAGCACGCTGGAGACGTTGGGAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis