Browse Element(s) Details


OsAffx.4474.1.S1_at

Description tigr:9633.m02732
TID=OsAffx.4474.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3016011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30150OsAffx.27081.2.S1_at11/115+17384645..17387319amino acid transporter family protein, putative
LOC_Os05g30160OsAffx.4474.1.S1_at11/115+17401913..17402653hypothetical protein
LOC_Os05g30170Os.14919.1.S1_at6/115+17404655..17406828hypothetical protein
LOC_Os05g30170Os.56216.1.S1_at2/115+17404655..17406828hypothetical protein
LOC_Os05g30170OsAffx.29313.1.S1_at1/115+17404655..17406828hypothetical protein
LOC_Os05g30180OsAffx.14881.1.S1_at11/115+17413836..17414682hypothetical protein
LOC_Os05g30180OsAffx.23565.1.S1_at1/115+17413836..17414682hypothetical protein
LOC_Os05g30180OsAffx.30241.1.S1_at1/115+17413836..17414682hypothetical protein
LOC_Os05g30190NANA5+17416559..17418145expressed protein
LOC_Os05g30200OsAffx.14882.1.S1_at11/115+17421553..17421987hypothetical protein
LOC_Os05g30210Os.50369.1.S1_at11/115+17425759..17429611expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4474.1.S1_at--1017--851Chr05:17402531..17402555 (25 bp)
ATGGCTCCTCGCGATTAGGGTAAGC
LOC_Os05g30160
OsAffx.4474.1.S1_at--539--7691Chr05:17402514..17402538 (25 bp)
GGGTAAGCCGTGTTGATTTCCTCAG
LOC_Os05g30160
OsAffx.4474.1.S1_at--947--4491Chr05:17402508..17402532 (25 bp)
GCCGTGTTGATTTCCTCAGTTTTTT
LOC_Os05g30160
OsAffx.4474.1.S1_at--71--10371Chr05:17402484..17402508 (25 bp)
TTTTTCTCGCCGGATTCGATCGTAG
LOC_Os05g30160
OsAffx.4474.1.S1_at--521--9331Chr05:17402478..17402502 (25 bp)
TCGCCGGATTCGATCGTAGTCTGAT
LOC_Os05g30160
OsAffx.4474.1.S1_at--649--6391Chr05:17402467..17402491 (25 bp)
GATCGTAGTCTGATGTGGCTTCTCC
LOC_Os05g30160
OsAffx.4474.1.S1_at--1013--8471Chr05:17402452..17402476 (25 bp)
TGGCTTCTCCCGCAATGGTTCTGCA
LOC_Os05g30160
OsAffx.4474.1.S1_at--12--1291Chr05:17402388..17402412 (25 bp)
AGATCTTCCCCTGGTGCGAGAGCAA
LOC_Os05g30160
OsAffx.4474.1.S1_at--198--9311Chr05:17402245..17402269 (25 bp)
TCCCGGTACACCAGGAGCGAGGAGA
LOC_Os05g30160
OsAffx.4474.1.S1_at--272--3731Chr05:17402114..17402138 (25 bp)
CTACGTCATGATGGGTCTCGGGCTG
LOC_Os05g30160
OsAffx.4474.1.S1_at--808--7151Chr05:17402100..17402124 (25 bp)
GTCTCGGGCTGATCGTTGGTCACTC
LOC_Os05g30160
Target Sequence 
ATGGCTCCTCGCGATTAGGGTAAGCCGTGTTGATTTCCTCAGTTTTTTTTTTCTCGCCGGATTCGATCGTAGTCTGATGT
GGCTTCTCCCGCAATGGTTCTGCATCATCGCCGCCGTCGCGATGGTGGCCGTGTTCGCCGCCGAGATCTTCCCCTGGTGC
GAGAGCAAGGGCGATGTGGCCCTGTGCGCCATCGCCCTGGCCGGCGCGCTGCTCATGGGGCCGATCCTGGGGTTGGCGAT
GACGGCGTGCGCCGCCGACGACGACGAGGCCGCCGCGCGCATCCCGTCCCGGTACACCAGGAGCGAGGAGAACATGGGGC
GAGCCGCCATCATGGCCGTGGCGCTGCTGGGGCTCTACGTCATCTACCTCGCCGCCGTGCGCGGCGGCGACAGCGGCAGG
TTCCTGGACGCGGCTTGCTACGTCATGATGGGTCTCGGGCTGATCGTTGGTCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis