Browse Element(s) Details


OsAffx.4509.1.S1_s_at

Description tigr:9633.m03119
TID=OsAffx.4509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0815011/11expressed protein
LOC_Os05g3377011/11hypothetical protein
LOC_Os02g461108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08080NANA1+3910503..3913076expressed protein
LOC_Os01g08090Os.32668.1.S1_at11/111+3914720..3917234Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os01g08100NANA1+3918158..3919936Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os01g08110Os.551.1.S1_at11/111+3921183..3923358UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g08120OsAffx.10960.1.S1_at11/111+3924252..3926249pentatricopeptide, putative, expressed
LOC_Os01g08130NANA1+3929149..3930154NPH3 family protein, expressed
LOC_Os01g08140Os.26710.1.S1_at3/111+3934551..3935714non-phototropic hypocotyl protein, putative
LOC_Os01g08150OsAffx.4509.1.S1_s_at11/111+3935935..3939207expressed protein
LOC_Os01g08150Os.554.1.S1_at11/111+3935935..3939207expressed protein
LOC_Os01g08150OsAffx.4509.1.S1_x_at2/111+3935935..3939207expressed protein
LOC_Os01g08160Os.29819.2.S1_x_at11/111+3949841..3951733myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g08170OsAffx.21565.1.S1_at11/111+3955424..3958705hypothetical protein
LOC_Os01g08170OsAffx.26278.1.S1_x_at2/111+3955424..3958705hypothetical protein
LOC_Os01g08180OsAffx.23159.1.S1_at7/111+3959267..3960370hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4509.1.S1_s_at--364--8392Chr05:19817715..19817739 (25 bp)
GGCGAAGGATCTGAACGAGATGTTC
LOC_Os05g33770
OsAffx.4509.1.S1_s_at--568--5313Chr05:19817718..19817742 (25 bp)
GAAGGATCTGAACGAGATGTTCCCG
LOC_Os05g33770
OsAffx.4509.1.S1_s_at--120--2913Chr05:19817719..19817743 (25 bp)
AAGGATCTGAACGAGATGTTCCCGG
LOC_Os05g33770
OsAffx.4509.1.S1_s_at--624--953Chr05:19817720..19817744 (25 bp)
AGGATCTGAACGAGATGTTCCCGGT
LOC_Os05g33770
OsAffx.4509.1.S1_s_at--521--7953Chr05:19817721..19817745 (25 bp)
GGATCTGAACGAGATGTTCCCGGTG
LOC_Os05g33770
OsAffx.4509.1.S1_s_at--23--6413Chr05:19817722..19817746 (25 bp)
GATCTGAACGAGATGTTCCCGGTGG
LOC_Os05g33770
OsAffx.4509.1.S1_s_at--476--433Chr05:19817723..19817747 (25 bp)
ATCTGAACGAGATGTTCCCGGTGGC
LOC_Os05g33770
OsAffx.4509.1.S1_s_at--1103--9453Chr05:19817724..19817748 (25 bp)
TCTGAACGAGATGTTCCCGGTGGCC
LOC_Os05g33770
OsAffx.4509.1.S1_s_at--571--3853Chr05:19817725..19817749 (25 bp)
CTGAACGAGATGTTCCCGGTGGCCG
LOC_Os05g33770
OsAffx.4509.1.S1_s_at--107--8992Chr05:19817726..19817750 (25 bp)
TGAACGAGATGTTCCCGGTGGCCGA
LOC_Os05g33770
OsAffx.4509.1.S1_s_at--373--4292Chr05:19817896..19817920 (25 bp)
CCTCGCCTCTCGCGTGGGACATCGA
LOC_Os05g33770
Target Sequence 
GGCGAAGGATCTGAACGAGATGTTCCCGGTGGCCGAAGCGGAGGCGGCGCCGCCGCGAACCCGCGGGGGTTCGTGAACCT
GCTGTGCAAGCAGCTTGACCACCTCGGCAACGCCAGGTTCGACCCGGCGCTGTTCCGCGTCGACGCCTACGGCAACGTGC
TCTACCTCCATGCCGACACTGCCTCGCCTCTCGCGTGGGACATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4509.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis