Browse Element(s) Details


OsAffx.4518.1.S1_s_at

Description tigr:9633.m03215
TID=OsAffx.4518.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3468011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34660OsAffx.14961.1.S1_at10/115+20481717..20482306hypothetical protein
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed
LOC_Os05g34680OsAffx.4518.1.S1_s_at11/115+20497882..20499899expressed protein
LOC_Os05g34680Os.48343.1.A1_at6/115+20497882..20499899expressed protein
LOC_Os05g34690OsAffx.14962.1.S1_at11/115+20500837..20502255hypothetical protein
LOC_Os05g34700Os.18450.1.S1_s_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.18450.1.S1_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.51561.1.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.28229.2.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34710Os.51244.1.S1_at11/115+20508160..20508951expressed protein
LOC_Os05g34720Os.27206.1.S1_at10/115+20512490..20515635Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os05g34730OsAffx.27165.1.S1_at11/115+20518075..20518668AP2 domain containing protein, expressed
LOC_Os05g34740NANA5+20522157..20522465hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4518.1.S1_s_at--636--6411Chr05:20499635..20499658 (24 bp)
GATCTGCGGCCAGTTCGCGACAGGA
LOC_Os05g34680
OsAffx.4518.1.S1_s_at--844--5651Chr05:20499050..20499072 (23 bp)
GACAGGACTAGCTGGTGATACCCAA
LOC_Os05g34680
OsAffx.4518.1.S1_s_at--1016--7751Chr05:20499037..20499061 (25 bp)
GGTGATACCCAAACATCCAAGGATG
LOC_Os05g34680
OsAffx.4518.1.S1_s_at--837--5551Chr05:20499008..20499032 (25 bp)
GAAAGCCCAGTCGAAAGGTCATACT
LOC_Os05g34680
OsAffx.4518.1.S1_s_at--214--2311Chr05:20498995..20499019 (25 bp)
AAAGGTCATACTGGGCGGACAGTTT
LOC_Os05g34680
OsAffx.4518.1.S1_s_at--418--10771Chr05:20498844..20498868 (25 bp)
TTGAGGTTGAGCTTGGTCTTAGAGA
LOC_Os05g34680
OsAffx.4518.1.S1_s_at--132--3211Chr05:20498780..20498804 (25 bp)
CAAGGTAATGTCTCTATGGATGTAC
LOC_Os05g34680
OsAffx.4518.1.S1_s_at--578--911Chr05:20498745..20498769 (25 bp)
AGGCTATGTACATTTTAGTATTTCC
LOC_Os05g34680
OsAffx.4518.1.S1_s_at--964--10291Chr05:20498725..20498749 (25 bp)
TTTCCTGTATACCTTGATTCTGCGT
LOC_Os05g34680
OsAffx.4518.1.S1_s_at--866--6571Chr05:20498710..20498734 (25 bp)
GATTCTGCGTTTGATTTGACCATAA
LOC_Os05g34680
OsAffx.4518.1.S1_s_at--267--10811Chr05:20498655..20498679 (25 bp)
TTGTCCTAAAGTTGAATTTCGTTCT
LOC_Os05g34680
Target Sequence 
GATCTGCGGCCAGTTCGCGACAGGACTAGCTGGTGATACCCAAACATCCAAGGATGATAAGAAAGCCCAGTCGAAAGGTC
ATACTGGGCGGACAGTTTTGATTGTCCTCCTAGGAATTGGGGCAGTCGTCCTGTTGTCATTTTTCCTTTTCAAGTATTGG
CAGAAGAAGAAAAGAGAGGAACAGCACGCACGTCTTCTAAAGCTGTTTGAAGAGGATGATGACATTGAGGTTGAGCTTGG
TCTTAGAGATTGAAGGTCTTCATTGTACAGCAAGAGTATCTTGGCTGACAAGGTAATGTCTCTATGGATGTACAAATGAT
GAAAGGCTATGTACATTTTAGTATTTCCTGTATACCTTGATTCTGCGTTTGATTTGACCATAAATTCAATGTAAAGTGTG
ATGTTCAACAATTTTGTCCTAAAGTTGAATTTCGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4518.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis