Browse Element(s) Details


OsAffx.4635.1.S1_at

Description tigr:9633.m04347
TID=OsAffx.4635.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4630011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46240Os.12856.1.S1_x_at11/115+26732360..26735467expressed protein
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46280Os.51305.1.S1_at11/115+26751145..26752237expressed protein
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
LOC_Os05g46300OsAffx.4635.1.S1_at11/115+26758153..26759784F-box domain containing protein
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g46340Os.17889.1.S1_at11/115+26775124..26776542expressed protein
LOC_Os05g46350Os.54961.1.S1_at11/115+26780094..26782862IQ calmodulin-binding motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4635.1.S1_at--614--6771Chr05:26758712..26758736 (25 bp)
GTTACATTAATCGTCTGCGTGATTT
LOC_Os05g46300
OsAffx.4635.1.S1_at--530--7591Chr05:26758676..26758700 (25 bp)
GGGACTTGAACATCGAGAGGTTTCT
LOC_Os05g46300
OsAffx.4635.1.S1_at--988--5711Chr05:26758502..26758526 (25 bp)
GACTCCTGCTCGAAGCAGCACCATG
LOC_Os05g46300
OsAffx.4635.1.S1_at--569--10471Chr05:26758454..26758478 (25 bp)
TTACCCCTTGGGATGATGAGCATTG
LOC_Os05g46300
OsAffx.4635.1.S1_at--431--4711Chr05:26758378..26758402 (25 bp)
GCTGGTTGTAGTTGGCTTCGAGGGA
LOC_Os05g46300
OsAffx.4635.1.S1_at--287--3631Chr05:26758363..26758387 (25 bp)
CTTCGAGGGAACAGAGAGACAGGTT
LOC_Os05g46300
OsAffx.4635.1.S1_at--633--10831Chr05:26758252..26758276 (25 bp)
TTGGGACTGGAAAATCGTGAGGCTC
LOC_Os05g46300
OsAffx.4635.1.S1_at--784--8511Chr05:26758245..26758269 (25 bp)
TGGAAAATCGTGAGGCTCCAACACC
LOC_Os05g46300
OsAffx.4635.1.S1_at--475--6211Chr05:26758234..26758258 (25 bp)
GAGGCTCCAACACCATTGGAGTGAT
LOC_Os05g46300
OsAffx.4635.1.S1_at--1030--7391Chr05:26758214..26758238 (25 bp)
GTGATGAGGAGAGATCCCAGATTCT
LOC_Os05g46300
OsAffx.4635.1.S1_at--1095--971Chr05:26758208..26758232 (25 bp)
AGGAGAGATCCCAGATTCTGAACCA
LOC_Os05g46300
Target Sequence 
GTTACATTAATCGTCTGCGTGATTTATGTATTGGTTGGGACTTGAACATCGAGAGGTTTCTTGGATTCACCAAGAACATA
ACGAACCTGGTCCTACGATTCACTGGATATGGGAGATGGTTCGTGCCATCTTGCCCCTCATTGTTGCTGGCTAATCTCAC
AAGGCTCCTGATTGCTGATGTGCCTTCATCATGGGATGTCTCTTGGCCTCGACTCCTGCTCGAAGCAGCACCATGCCTGG
AGAGCCTTCACATCCATATTACCCCTTGGGATGATGAGCATTGTGATGAAATCATTTGGAAACCATCCACTTTGCAGCAT
GAAAAGCTGAAGGAGCTGGTTGTAGTTGGCTTCGAGGGAACAGAGAGACAGGTTTACTTTGTTAACTTTGTGATGGAAGT
ATCAACGGCATTGCAGCTTGTTGCTCTGTTTAGATATGGGCGTGTTGAAGAAATGGGGCGTTGGGACTGGAAAATCGTGA
GGCTCCAACACCATTGGAGTGATGAGGAGAGATCCCAGATTCTGAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis