Browse Element(s) Details


OsAffx.4669.1.S1_at

Description tigr:9633.m04674
TID=OsAffx.4669.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=isocitrate dehydrogenase, NADP-dependent
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g497609/11Isocitrate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49730Os.50134.1.S1_at11/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49730Os.50134.2.S1_at10/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49740Os.54298.1.S1_at11/115+28450941..28453653pentatricopeptide, putative, expressed
LOC_Os05g49750Os.18409.1.S1_at11/115+28456444..28460577expressed protein
LOC_Os05g49760Os.2326.1.S1_s_at11/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49760OsAffx.4669.1.S1_at9/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_s_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.5124.1.S1_at11/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.24180.1.A1_s_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49770Os.14993.1.A1_at1/115+28468040..28474037CTP synthase, putative, expressed
LOC_Os05g49780Os.28038.1.S1_at10/115+28489163..28491882CCAAT-binding transcription factor subunit HAP3C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004450molecular_functionisocitrate dehydrogenase (NADP+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4669.1.S1_at--762--2291Chr05:28468121..28468145 (25 bp)
AAATGTGCAGGCTCCACCAAGCTAG
LOC_Os05g49760
OsAffx.4669.1.S1_at--711--7032Chr08:25355870..25355961 (25 bp)
GTAAACCCTAGCTATTTTTGCGTTG
NONE
OsAffx.4669.1.S1_at--883--10391Chr05:28468272..28468296 (25 bp)
TTTTGCGTTGATGCGACAGCTCAAG
LOC_Os05g49760
OsAffx.4669.1.S1_at--707--8151Chr05:28468324..28468348 (25 bp)
GGAAATGGCTCTTCATGTCGCTGGA
LOC_Os05g49760
OsAffx.4669.1.S1_at--775--7231Chr05:28468340..28468709 (25 bp)
GTCGCTGGAGCTAAGGACCCATTCA
NONE
OsAffx.4669.1.S1_at--361--5811NONE
GACCCATTCAATCTCTTCTTAGTTT
NONE
OsAffx.4669.1.S1_at--783--5351Chr05:28468507..28468532 (25 bp)
GAAGATGCTGTTGCCGTTTGCATAG
LOC_Os05g49760
OsAffx.4669.1.S1_at--235--9071Chr05:28468526..28468550 (25 bp)
TGCATAGTAGCAGCCGTTCACCAGG
LOC_Os05g49760
OsAffx.4669.1.S1_at--350--891Chr05:28468548..28468572 (25 bp)
AGGCCGTTCTTGACATGTCCATTTT
LOC_Os05g49760
OsAffx.4669.1.S1_at--490--10191Chr05:28468575..28468599 (25 bp)
TATAGCTTCTGTTGTTTCGTGGCTC
LOC_Os05g49760
OsAffx.4669.1.S1_at--202--6671Chr05:28468601..28468625 (25 bp)
GTTGCAGTAGTTGCCACGTCTGACT
LOC_Os05g49760
Target Sequence 
AAATGTGCAGGCTCCACCAAGCTAGCTACACACCTCCAGCTAGCCTTAAACTTCAATATAATATAAGGCATCAAGCAAGC
AAACGAACAAACAAAAGAAATAATAATATTGCATTAGATTAACTAGTTCACTACTAGTAAACCCTAGCTATTTTTGCGTT
GATGCGACAGCTCAAGTGCTCATTTCTCCCTCCTTAAAACATCGGAAATGGCTCTTCATGTCGCTGGAGCTAAGGACCCA
TTCAATCTCTTCTTAGTTTAGCAGAGAGACGAATCCATAACCCTAAAAAAAATAGGAGAAAAAACACGCAAAAAAAAGGG
AGAAAAAACAAAGCAGGTAAATCTCTCNAGTGCAATGGCTTAGGCAGAGCTATGCTGCTAAGTATGAAGATGCTGTTGCC
GTTTGCATAGTAGCAGCCGTTCACCAGGCCGTTCTTGACATGTCCATTTTGGTATAGCTTCTGTTGTTTCGTGGCTCCGT
TGCAGTAGTTGCCACGTCTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis