Browse Element(s) Details


OsAffx.4682.1.S1_at

Description tigr:9633.m04835
TID=OsAffx.4682.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5127010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51240Os.49146.1.S1_at11/115+29302754..29304882hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g51250Os.47463.1.S1_x_at6/115+29308191..29313113transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51250Os.14491.2.S1_x_at5/115+29308191..29313113transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51260NANA5+29314640..29317944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51270OsAffx.4682.1.S1_at10/115+29328611..29329884hypothetical protein
LOC_Os05g51280Os.26886.6.S1_s_at11/115+29330993..29334109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51280Os.26886.2.S1_s_at9/115+29330993..29334109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51280OsAffx.16467.1.S1_at7/115+29330993..29334109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51280OsAffx.3425.1.S1_at1/115+29330993..29334109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51290Os.26886.1.S1_x_at7/115+29336934..29340237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51290Os.26886.3.S1_x_at5/115+29336934..29340237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51290OsAffx.16244.1.S1_x_at1/115+29336934..29340237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51300OsAffx.27015.1.S1_at11/115+29344790..29347421AC transposase, putative
LOC_Os05g51300OsAffx.27015.1.S1_x_at11/115+29344790..29347421AC transposase, putative
LOC_Os05g51300Os.53746.1.S1_x_at1/115+29344790..29347421AC transposase, putative
LOC_Os05g51310NANA5+29349319..29352505retrotransposon protein, putative, unclassified
LOC_Os05g51320OsAffx.20387.1.S1_x_at3/115+29352960..29356729retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4682.1.S1_at--493--8631Chr05:29328645..29328669 (25 bp)
TGGGTGTCTTCGTCATCGTGGTGCA
LOC_Os05g51270
OsAffx.4682.1.S1_at--775--3411Chr05:29328682..29328706 (25 bp)
CAGCAAGCAGCGTCGTGCAGGAGCA
LOC_Os05g51270
OsAffx.4682.1.S1_at--1001--7631Chr05:29328782..29328806 (25 bp)
GGGACGCGCACATGCCAGATGGACA
LOC_Os05g51270
OsAffx.4682.1.S1_at--568--1311Chr05:29328798..29328822 (25 bp)
AGATGGACACGACCAGCCTCGCGGT
LOC_Os05g51270
OsAffx.4682.1.S1_at--260--6131Chr05:29328836..29328860 (25 bp)
GAGTGGCCGCCTTCGGGATCTTGCT
LOC_Os05g51270
OsAffx.4682.1.S1_at--317--7851Chr05:29328873..29328897 (25 bp)
GGTATGCCATCGACGAGCAGCCCAG
LOC_Os05g51270
OsAffx.4682.1.S1_at--106--1671Chr05:29328891..29328915 (25 bp)
AGCCCAGCGATGTGTCCGACAGAGG
LOC_Os05g51270
OsAffx.4682.1.S1_at--739--8691Chr05:29328918..29328942 (25 bp)
TGTGCTGCCTCTGCGTGTACATCGT
LOC_Os05g51270
OsAffx.4682.1.S1_at--10--7031Chr05:29328934..29328958 (25 bp)
GTACATCGTCACCATGAGGCTTATC
LOC_Os05g51270
OsAffx.4682.1.S1_at--1039--9531NONE
TCTACGACTGCACTGGTAGTGGCGT
NONE
OsAffx.4682.1.S1_at--679--6031Chr05:29329828..29329852 (25 bp)
GAGATGATGCCAGGGCGACAGTCTT
LOC_Os05g51270
Target Sequence 
TGGGTGTCTTCGTCATCGTGGTGCAGGGTGGCGGCAGCAGCAAGCAGCGTCGTGCAGGAGCAGGTGTTGCGGTTGCAGTG
GTGGTGGTGCTGCTGCTGCATGCAGCACCAGCTGCTCCTGCACAGGGGTCGTTGCAGGGGACGCGCACATGCCAGATGGA
CACGACCAGCCTCGCGGTGCTGTCGTGCCAGGAGTGGCCGCCTTCGGGATCTTGCTGCGACGCGCTGCGGTATGCCATCG
ACGAGCAGCCCAGCGATGTGTCCGACAGAGGCCTGTGCTGCCTCTGCGTGTACATCGTCACCATGAGGCTTATCTCCGTC
GACCTCCCGTATGTCTACCGCGTGTGCCGCGGAAAGGATGCGGAGGCCGTCGCCGCCTGGATCGCTCTGCAGCCTCCTCC
TGTCTACGACTGCACTGGTAGTGGCGTGGAGATGATGCCAGGGCGACAGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis