Browse Element(s) Details


OsAffx.4736.1.S1_at

Description tigr:9634.m00504
TID=OsAffx.4736.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0579010/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05760OsAffx.5303.1.S1_at11/116+2606882..2607796Ubiquitin family protein
LOC_Os06g05770OsAffx.15277.1.S1_at11/116+2611136..2611802hypothetical protein
LOC_Os06g05780NANA6+2614721..2621390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g05790OsAffx.4736.1.S1_at10/116+2630870..2634263Transferase family protein, expressed
LOC_Os06g05800Os.22463.1.S1_at11/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05800OsAffx.15278.1.S1_s_at11/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05800OsAffx.15278.1.S1_at6/116+2634909..2640380RNA recognition motif family protein, expressed
LOC_Os06g05810NANA6+2645016..2645578hypothetical protein
LOC_Os06g05820Os.9144.1.S1_a_at9/116+2651070..2660303DNA repair protein RadA containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4736.1.S1_at--582--8731Chr06:2632862..2632886 (25 bp)
TGTCAGCCAGGCTATGGCCGCGGCT
LOC_Os06g05790
OsAffx.4736.1.S1_at--292--7551NONE
GTGGCGCGCCATGCGAGCCGCTTTT
NONE
OsAffx.4736.1.S1_at--730--9151Chr06:2632467..2632756 (25 bp)
TGCGAGCCGCTTTTTTATATGGTTT
LOC_Os06g05790
OsAffx.4736.1.S1_at--649--7831Chr06:2632401..2632425 (25 bp)
GGTAACCCTGGCAGCCGCACTTGAT
LOC_Os06g05790
OsAffx.4736.1.S1_at--1066--4491Chr06:2632388..2632412 (25 bp)
GCCGCACTTGATCTTGAATCCTTGA
LOC_Os06g05790
OsAffx.4736.1.S1_at--556--10391Chr06:2631110..2631462 (25 bp)
TTTTGAGACAACTGGCAGAGAGGTC
LOC_Os06g05790
OsAffx.4736.1.S1_at--1029--5951Chr06:2631036..2631060 (25 bp)
GAGAAGTGGTTGTCAGTCAAGGTCA
LOC_Os06g05790
OsAffx.4736.1.S1_at--564--7911Chr06:2631029..2631053 (25 bp)
GGTTGTCAGTCAAGGTCAATGTGGC
LOC_Os06g05790
OsAffx.4736.1.S1_at--1040--7691Chr06:2630974..2630998 (25 bp)
GGGTCATCGAGCACTGTGTTCGACA
LOC_Os06g05790
OsAffx.4736.1.S1_at--906--5931Chr06:2630966..2630990 (25 bp)
GAGCACTGTGTTCGACATGGTCAGC
LOC_Os06g05790
OsAffx.4736.1.S1_at--700--10631Chr06:2630956..2630980 (25 bp)
TTCGACATGGTCAGCGCGGTGCTCG
LOC_Os06g05790
Target Sequence 
TGTCAGCCAGGCTATGGCCGCGGCTCGCCGACGCCATCGAGGCGGATCCGGACGCCGTGCTCAAGCCGGCCACGGCGGCG
CGGCTCGGCCTCGCTCGCCGCGCGCCGGCGGCCGCCGACGTGGCGCGCCATGCGAGCCGCTTTTTTATATGGTTTTTACG
GTTACCGCGCGATAAACGTGCTTACCGTCGGGGCGCGGTAACCCTGGCAGCCGCACTTGATCTTGAATCCTTGAAGAAGG
TGAATTTTTTTGAGACAACTGGCAGAGAGGTCGAGGAAGTGAAGGGTGCTGAATACAGTGAGGGAGGAGGGGAAGGGGTT
GGAGAAGTGGTTGTCAGTCAAGGTCAATGTGGCGGAGGGTGTGGCAGGTGGTGTTGGGGGATGGGGTCATCGAGCACTGT
GTTCGACATGGTCAGCGCGGTGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis