Browse Element(s) Details


OsAffx.4742.1.S1_x_at

Description gb:NM_185625.1
DB_XREF= gi:34898335
TID=OsAffx.4742.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g066209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06570Os.52871.1.S1_x_at11/116+3089169..3089826expressed protein
LOC_Os06g06580OsAffx.27473.1.S1_at11/116+3092919..3094988hypothetical protein
LOC_Os06g06590OsAffx.27474.1.S1_at11/116+3095000..3096884expressed protein
LOC_Os06g06600Os.4354.1.S1_at11/116+3103605..3106509F-box domain containing protein, expressed
LOC_Os06g06610Os.4355.1.S1_at9/116+3110550..3114194expressed protein
LOC_Os06g06620OsAffx.4742.2.S1_s_at11/116+3114722..3115027hypothetical protein
LOC_Os06g06620OsAffx.4742.1.S1_x_at9/116+3114722..3115027hypothetical protein
LOC_Os06g06630NANA6+3117179..3118435hypothetical protein
LOC_Os06g06640NANA6+3118930..3119280hypothetical protein
LOC_Os06g06650NANA6+3120706..3121721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g06660Os.36001.1.S1_at11/116+3127080..3129960expressed protein
LOC_Os06g06670Os.32061.2.S1_x_at11/116+3130222..3133227expressed protein
LOC_Os06g06670Os.32061.1.S1_at10/116+3130222..3133227expressed protein
LOC_Os06g06680OsAffx.15289.1.S1_at11/116+3134632..3135975expressed protein
LOC_Os06g06690OsAffx.27477.1.S1_at8/116+3138201..3138653hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_at11/116+3138824..3139219hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_s_at11/116+3138824..3139219hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4742.1.S1_x_at--999--9031Chr06:3114966..3114990 (25 bp)
TGCAGCTGTCGGAGTTGCCAGACCC
LOC_Os06g06620
OsAffx.4742.1.S1_x_at--47--3971Chr06:3114957..3114981 (25 bp)
CGGAGTTGCCAGACCCGGAGACCAG
LOC_Os06g06620
OsAffx.4742.1.S1_x_at--639--4971Chr06:3114930..3114954 (25 bp)
GCATCCGCGTGGAGGAGACCAAGCA
LOC_Os06g06620
OsAffx.4742.1.S1_x_at--875--1611Chr06:3114906..3114930 (25 bp)
AGCTGGTCGCCGATATGCAAAGCAT
LOC_Os06g06620
OsAffx.4742.1.S1_x_at--505--2351Chr06:3114888..3114912 (25 bp)
AAAGCATCATCGAGGCGCTGCTGGT
LOC_Os06g06620
OsAffx.4742.1.S1_x_at--34--3551Chr06:3114881..3114905 (25 bp)
CATCGAGGCGCTGCTGGTGTTCGTC
LOC_Os06g06620
OsAffx.4742.1.S1_x_at--1088--8612Chr10:11400361..11400877 (25 bp)
TGGTGTTCGTCGACGCCGGCTGCTC
NONE
OsAffx.4742.1.S1_x_at--571--571Chr06:3114823..3114847 (25 bp)
ATCCACGAGATGATCCGCCACATGA
LOC_Os06g06620
OsAffx.4742.1.S1_x_at--1152--1291Chr06:3114818..3114840 (23 bp)
AGATGATCCGCCACATGAGGGAGCG
LOC_Os06g06620
OsAffx.4742.1.S1_x_at--577--5871Chr06:3114712..3114736 (25 bp)
GAGCCTCGACCATGATAATGGCGGC
NONE
OsAffx.4742.1.S1_x_at--231--7391Chr06:3114680..3114704 (25 bp)
GTGATGAAGGCATCGGCCTCCGGCA
NONE
Target Sequence 
TGCAGCTGTCGGAGTTGCCAGACCCGGAGACCAGCCGCATCCGCGTGGAGGAGACCAAGCAGCTGGTCGCCGATATGCAA
AGCATCATCGAGGCGCTGCTGGTGTTCGTCGACGCCGGCTGCTCTCCCGTCCCCGTCGACGAGATCCACGAGATGATCCG
CCACATGAGGGAGCGGCGGCGGCGGCCCTCGAGCCTCGACCATGATAATGGCGGCGGCGGCGGTGATGAAGGCATCGGCC
TCCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4742.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis