Browse Element(s) Details


OsAffx.4763.1.S1_at

Description tigr:9634.m00753
TID=OsAffx.4763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=major facilitator superfamily protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0817011/11glycerol-3-phosphate transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08120OsAffx.16867.1.S1_at1/116+3940688..3942448expressed protein
LOC_Os06g08120Os.25011.1.A1_at1/116+3940688..3942448expressed protein
LOC_Os06g08130OsAffx.4762.1.S1_at10/116+3945826..3946219hypothetical protein
LOC_Os06g08140Os.17303.1.S1_at11/116+3946928..3951246Protein phosphatase 2C containing protein, expressed
LOC_Os06g08154Os.50451.1.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.50451.2.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.51075.1.S1_x_at1/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08170OsAffx.4763.1.S1_at11/116+3961447..3963777glycerol-3-phosphate transporter, putative, expressed
LOC_Os06g08180Os.23130.1.S1_at11/116+3965108..3968547expressed protein
LOC_Os06g08190OsAffx.27503.1.S1_at11/116+3971494..3971961hypothetical protein
LOC_Os06g08200NANA6+3974757..3975129hypothetical protein
LOC_Os06g08210OsAffx.15306.1.S1_s_at5/116+3976892..3977242hypothetical protein
LOC_Os06g08220Os.48515.1.S1_at11/116+3980607..3981577expressed protein
LOC_Os06g08220OsAffx.27505.1.S1_s_at11/116+3980607..3981577expressed protein
LOC_Os06g08230OsAffx.27506.1.S1_at11/116+3982595..3983271hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0008643biological_processcarbohydrate transport
GO:0015794biological_processglycerol-3-phosphate transport
GO:0005215molecular_functiontransporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015169molecular_functionglycerol-3-phosphate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4763.1.S1_at--631--2711Chr06:3962910..3962934 (25 bp)
AAGCTTGTGGCTTATACCTTCCTTT
LOC_Os06g08170
OsAffx.4763.1.S1_at--906--10651Chr06:3962892..3962916 (25 bp)
TTCCTTTACTGGTTGCCGTTCTATA
LOC_Os06g08170
OsAffx.4763.1.S1_at--1105--8491Chr06:3961937..3961961 (25 bp)
TGGCAGGTCAGTTCTTATCACACAA
LOC_Os06g08170
OsAffx.4763.1.S1_at--315--9451Chr06:3961857..3961881 (25 bp)
TCGGCTGGTTTGCTCTCAGACAAAA
LOC_Os06g08170
OsAffx.4763.1.S1_at--88--291Chr06:3961833..3961857 (25 bp)
ATAGGTGCTCGTGCTGTAACATCAG
LOC_Os06g08170
OsAffx.4763.1.S1_at--907--1571Chr06:3961810..3961834 (25 bp)
AGCTCTGTTCCTTTTTCTTTCAATC
LOC_Os06g08170
OsAffx.4763.1.S1_at--591--4571Chr06:3961782..3961806 (25 bp)
GCGCTTATCCTTTACCGGACATATG
LOC_Os06g08170
OsAffx.4763.1.S1_at--314--1711Chr06:3961680..3961704 (25 bp)
ACCACAGCTGTTGCTACTGATCTTG
LOC_Os06g08170
OsAffx.4763.1.S1_at--1034--1351Chr06:3961626..3961650 (25 bp)
AGAGCTTTGGCTACAGTGTCTGCGA
LOC_Os06g08170
OsAffx.4763.1.S1_at--1150--6451Chr06:3961603..3961627 (25 bp)
GATAATCGATGGCACGGGTTCTGTT
LOC_Os06g08170
OsAffx.4763.1.S1_at--299--251Chr06:3961497..3961521 (25 bp)
ATATCACTTGCCCTGGTGTTTTTGA
LOC_Os06g08170
Target Sequence 
AAGCTTGTGGCTTATACCTTCCTTTACTGGTTGCCGTTCTATATCCGGCACAATGCTGTGGCAGGTCAGTTCTTATCACA
CAAGGCTTCAGGAATTTTGTCTGTTGTTTTCGATATTGGAGGAGTTTTGGGAGGCATTTCGGCTGGTTTGCTCTCAGACA
AAATAGGTGCTCGTGCTGTAACATCAGCTCTGTTCCTTTTTCTTTCAATCCCCGCGCTTATCCTTTACCGGACATATGGA
AGCATATCCATGCACCACAACATTGGGCTCATGTTCCTCGCCGGCTACTTTGTGAATGGCCCATACTCACTCATCACCAC
AGCTGTTGCTACTGATCTTGGTACTCAGGATGCAATCAAGGGAAACTCGAGAGCTTTGGCTACAGTGTCTGCGATAATCG
ATGGCACGGGTTCTGTTGGGGCGGCTTTGGGACCCTTGTTAACTGGGTATATTTCAACAAGAGGATGGAACAGCGTATTT
TTCATGCTGATTGTTTCCATATCACTTGCCCTGGTGTTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis