Browse Element(s) Details


OsAffx.4801.1.S1_at

Description tigr:9634.m01141
TID=OsAffx.4801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1167011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11640Os.49227.1.S1_at11/116+6170590..6175330Phosphotyrosyl phosphate activator protein, expressed
LOC_Os06g11650Os.50807.1.S1_at9/116+6176897..6178164Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11660Os.37006.1.S1_at6/116+6179336..6180477Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11670OsAffx.4801.1.S1_at11/116+6188102..6188359hypothetical protein
LOC_Os06g11680OsAffx.27569.1.S1_at11/116+6190532..6191497Phosphate-induced protein 1 conserved region containing protein
LOC_Os06g11690OsAffx.27570.1.S1_at11/116+6196207..6196577hypothetical protein
LOC_Os06g11700OsAffx.15374.1.S1_s_at11/116+6198475..6199739Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11710OsAffx.27571.1.S1_at11/116+6201141..6201791Cytokinin-O-glucosyltransferase 2, putative
LOC_Os06g11720Os.51664.1.S1_at11/116+6204614..6206558UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11730Os.12968.1.S1_at11/116+6207297..6213435RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4801.1.S1_at--944--2711Chr06:6188294..6188318 (25 bp)
AAGCAGTTGGGCGATGCTAGATGAT
LOC_Os06g11670
OsAffx.4801.1.S1_at--641--372Chr11:3117654..3117674 (21 bp)
ATGAAGACCGAAGGGTTCGCCAGTT
NONE
OsAffx.4801.1.S1_at--33--5831Chr06:6188266..6188290 (25 bp)
GACCGAAGGGTTCGCCAGTTCGCCA
LOC_Os06g11670
OsAffx.4801.1.S1_at--923--2851Chr06:6188239..6188263 (25 bp)
AAGTCCACTATCCATGACGAGCCAT
LOC_Os06g11670
OsAffx.4801.1.S1_at--243--692Chr09:2990234..2990257 (24 bp)
ATGACGAGCCATCACTACGGGCGAA
NONE
OsAffx.4801.1.S1_at--472--372Chr09:2990243..2990267 (25 bp)
ATCACTACGGGCGAAGGCCGTAAAG
NONE
OsAffx.4801.1.S1_at--119--8372Chr09:2990252..2990636 (25 bp)
GGCGAAGGCCGTAAAGCGAAACAAG
NONE
OsAffx.4801.1.S1_at--882--7851Chr06:6188180..6188204 (25 bp)
GGTTTCGCCCAAGTTAGAAGTGGCT
LOC_Os06g11670
OsAffx.4801.1.S1_at--143--11Chr06:6188176..6188200 (25 bp)
TCGCCCAAGTTAGAAGTGGCTTCGG
LOC_Os06g11670
OsAffx.4801.1.S1_at--316--1091Chr06:6188162..6188186 (25 bp)
AGTGGCTTCGGTAGAGGGCTTGGGA
LOC_Os06g11670
OsAffx.4801.1.S1_at--761--10831Chr06:6188143..6188167 (25 bp)
TTGGGAGACACCGTGGCCCCTGGAG
LOC_Os06g11670
Target Sequence 
AAGCAGTTGGGCGATGCTAGATGATGAAGACCGAAGGGTTCGCCAGTTCGCCACCAAGTCCACTATCCATGACGAGCCAT
CACTACGGGCGAAGGCCGTAAAGCGAAACAAGAGGGTTTCGCCCAAGTTAGAAGTGGCTTCGGTAGAGGGCTTGGGAGAC
ACCGTGGCCCCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis