Browse Element(s) Details


OsAffx.4823.1.S1_at

Description tigr:9634.m01313
TID=OsAffx.4823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1323011/11hypothetical protein
LOC_Os10g221901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13210Os.52127.1.S1_at11/116+7246885..7250001POT family protein, expressed
LOC_Os06g13220OsAffx.27606.1.S1_at11/116+7253017..7262715axi 1 gene, putative, expressed
LOC_Os06g13220Os.51377.1.A1_at11/116+7253017..7262715axi 1 gene, putative, expressed
LOC_Os06g13230OsAffx.4823.1.S1_at11/116+7267095..7267601hypothetical protein
LOC_Os06g13240OsAffx.4825.1.S1_at11/116+7277366..7281976BURP domain containing protein
LOC_Os06g13250OsAffx.27607.1.S1_at11/116+7292012..7294139hypothetical protein
LOC_Os06g13250OsAffx.27607.2.S1_s_at11/116+7292012..7294139hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4823.1.S1_at--641--4411Chr06:7267521..7267545 (25 bp)
GCCACCTCGGCCGAATCTGGAGGGT
LOC_Os06g13230
OsAffx.4823.1.S1_at--1086--7491Chr06:7267485..7267509 (25 bp)
GTGGTCGTGGCAACTGGCAGTGTCG
LOC_Os06g13230
OsAffx.4823.1.S1_at--435--931Chr06:7267386..7267410 (25 bp)
AGGCAGCGGCTGCATTGGCGGTGGC
LOC_Os06g13230
OsAffx.4823.1.S1_at--447--4611Chr06:7267363..7267387 (25 bp)
GCGACGATTTGCGAAGGCGGCGGCT
LOC_Os06g13230
OsAffx.4823.1.S1_at--737--10871Chr06:7267334..7267358 (25 bp)
TTGGCGACTGGTGACAACGACAGCA
LOC_Os06g13230
OsAffx.4823.1.S1_at--863--8951Chr06:7267323..7267347 (25 bp)
TGACAACGACAGCAGTGACGGCGAC
LOC_Os06g13230
OsAffx.4823.1.S1_at--49--4931Chr06:7267296..7267320 (25 bp)
GCTTGCGGTGGCCATGACTGAGGAG
LOC_Os06g13230
OsAffx.4823.1.S1_at--858--3251Chr06:7267267..7267291 (25 bp)
CAACGATGTCGGTGGATGCGACTGT
LOC_Os06g13230
OsAffx.4823.1.S1_at--983--1954Chr03:7175929..7175948 (20 bp)
ACTGTGGCTGGCGACGTCGTGCAGA
NONE
OsAffx.4823.1.S1_at--557--3411Chr06:7267226..7267250 (25 bp)
CAGACGGTCGCCGGAGACAGCAAGT
LOC_Os06g13230
OsAffx.4823.1.S1_at--986--7693Chr08:16167656..16167709 (24 bp)
GGTGGCGGTGACCATGACTGCGGTG
NONE
Target Sequence 
GCCACCTCGGCCGAATCTGGAGGGTGGCCGGCGGTGGTGGTCGTGGCAACTGGCAGTGTCGGCTGGTGACGGCGGCGGAG
GGCATGGCGGCGGCGTCGGGGCGGTTGCTGGCTGCTTTGGCGGCGGAGGGCGACGAGGCAGCGGCTGCATTGGCGGTGGC
GACGATTTGCGAAGGCGGCGGCTGGCGTTGGCGACTGGTGACAACGACAGCAGTGACGGCGACCGGCTTGCGGTGGCCAT
GACTGAGGAGGCGACAACGATGTCGGTGGATGCGACTGTGGCTGGCGACGTCGTGCAGACGGTCGCCGGAGACAGCAAGT
GGAGGCGGGGAAGGAGTCGGGTGCGAGGTGAGGATGGCGACAGTGAGGTGGCTGGCCGTTCGGCAGCAACGGCTGCGGTG
GCGGTGACCATGACTGCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis