Browse Element(s) Details


OsAffx.4864.1.S1_at

Description tigr:9634.m01780
TID=OsAffx.4864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g157202/11hypothetical protein
LOC_Os12g185101/11hypothetical protein
LOC_Os07g158301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15690Os.27198.1.S1_at11/112+8834266..8837490glycoside hydrolase family 28 protein, putative, expressed
LOC_Os02g15700Os.49774.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15700Os.54037.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15704Os.53480.1.S1_x_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.56035.1.S1_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.27237.3.A1_x_at1/112+8850621..8851895expressed protein
LOC_Os02g15710OsAffx.2629.1.S1_at11/112+8854325..8854983Chemocyanin precursor, putative
LOC_Os02g15720OsAffx.4864.1.S1_at2/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.18048.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.30486.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15730OsAffx.24270.1.S1_x_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15730OsAffx.24270.1.S1_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15740Os.16163.1.S1_at8/112+8869106..8871518expressed protein
LOC_Os02g15750Os.16733.1.S1_at11/112+8873039..8876439expressed protein
LOC_Os02g15760OsAffx.2630.1.S1_at11/112+8879440..8882658Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g15760OsAffx.2630.1.S1_x_at10/112+8879440..8882658Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4864.1.S1_at--45--10536Chr09:8806462..8806481 (20 bp)
TTCACTCTCCTCTTGACAAGTGTCC
NONE
OsAffx.4864.1.S1_at--436--5593Chr02:8858892..8858916 (25 bp)
GACAAGTGTCCTCTTTATGACGGTT
LOC_Os02g15720
OsAffx.4864.1.S1_at--905--9558Chr12:8811001..8811021 (21 bp)
TCTTTATGACGGTTTCCACCGGTAG
NONE
OsAffx.4864.1.S1_at--51--6171Chr06:10415768..10415792 (25 bp)
GAGGAGTACAACCATCATACAATTG
NONE
OsAffx.4864.1.S1_at--799--3111Chr06:10415748..10415772 (25 bp)
AATTGGGCTAGATACCCTGACCGGC
NONE
OsAffx.4864.1.S1_at--695--10031Chr06:10415740..10415764 (25 bp)
TAGATACCCTGACCGGCTCTGCTGT
NONE
OsAffx.4864.1.S1_at--256--9131Chr06:10415721..10415745 (25 bp)
TGCTGTCCTAGTCCTTCCTCAGGAT
NONE
OsAffx.4864.1.S1_at--287--10675Chr11:12744696..12744716 (21 bp)
TTCCTCAGGATGCTGACATGTGGGC
NONE
OsAffx.4864.1.S1_at--347--8651Chr06:10415687..10415711 (25 bp)
TGGGCCCCACTTTATGGCACACCAT
NONE
OsAffx.4864.1.S1_at--858--8211Chr06:10415460..10415696 (25 bp)
GGCACACCATGTATTGACGGCAAGA
NONE
OsAffx.4864.1.S1_at--714--3192Chr11:8465618..8465640 (23 bp)
CAAGAATTTTGTACTTAACAGCCGT
NONE
Target Sequence 
TTCACTCTCCTCTTGACAAGTGTCCTCTTTATGACGGTTTCCACCGGTAGAAACGGCCACAACCGTCATTGGGATGAGGA
GTACAACCATCATACAATTGGGCTAGATACCCTGACCGGCTCTGCTGTCCTAGTCCTTCCTCAGGATGCTGACATGTGGG
CCCCACTTTATGGCACACCATGTATTGACGGCAAGAATTTTGTACTTAACAGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis