Browse Element(s) Details


OsAffx.4869.1.S1_at

Description tigr:9634.m01820
TID=OsAffx.4869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1891011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18860NANA6+10714502..10717209hAT family dimerisation domain containing protein
LOC_Os06g18870NANA6+10723595..10723849hypothetical protein
LOC_Os06g18880OsAffx.27695.1.S1_at11/116+10725715..10728489hypothetical protein
LOC_Os06g18890NANA6+10730135..10730489hypothetical protein
LOC_Os06g18900Os.40342.1.A1_s_at11/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18900OsAffx.15485.1.S1_at11/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18900Os.18183.1.S1_at1/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18910OsAffx.4869.1.S1_at11/116+10742132..10743460hypothetical protein
LOC_Os06g18920OsAffx.3235.1.S1_at1/116+10747593..10748711expressed protein
LOC_Os06g18930OsAffx.27698.1.S1_at11/116+10755375..10758996hypothetical protein
LOC_Os06g18930OsAffx.27697.1.S1_at11/116+10755375..10758996hypothetical protein
LOC_Os06g18940OsAffx.2494.1.S1_at1/116+10763396..10766597hypothetical protein
LOC_Os06g18940OsAffx.12184.1.S1_x_at1/116+10763396..10766597hypothetical protein
LOC_Os06g18950OsAffx.22699.1.S1_x_at2/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18950OsAffx.8279.1.S1_at1/116+10766948..10773882retrotransposon protein, putative, unclassified
LOC_Os06g18950OsAffx.31867.1.S1_x_at1/116+10766948..10773882retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4869.1.S1_at--1091--8451Chr06:10742245..10742269 (25 bp)
TGGCCTCGATGTGATGCTCAACCTG
LOC_Os06g18910
OsAffx.4869.1.S1_at--74--2631Chr06:10742264..10742288 (25 bp)
AACCTGCTACTGCAATCTTCATGCG
LOC_Os06g18910
OsAffx.4869.1.S1_at--321--10531Chr06:10742281..10742305 (25 bp)
TTCATGCGGCCCCAAGGTTGAGGAC
LOC_Os06g18910
OsAffx.4869.1.S1_at--258--5491Chr06:10742314..10742338 (25 bp)
GAACATGCTATCATGCTGCTTCATG
LOC_Os06g18910
OsAffx.4869.1.S1_at--143--7431Chr06:10742357..10742381 (25 bp)
GTGTTCACTGGACGAATGTGCGCTA
LOC_Os06g18910
OsAffx.4869.1.S1_at--1073--771Chr06:10742372..10742396 (25 bp)
ATGTGCGCTACATTGCCATGGTGGT
LOC_Os06g18910
OsAffx.4869.1.S1_at--978--1051Chr06:10742411..10742435 (25 bp)
AGGTGGATCCACTTGCGTGATCAGC
LOC_Os06g18910
OsAffx.4869.1.S1_at--320--311Chr06:10742588..10742612 (25 bp)
ATACCACATCAATTTCCCCAATGTA
LOC_Os06g18910
OsAffx.4869.1.S1_at--359--4811Chr06:10742619..10742643 (25 bp)
GTAGCCGGCAAGAGTTACCAACGAT
LOC_Os06g18910
OsAffx.4869.1.S1_at--1116--8931Chr06:10742877..10742901 (25 bp)
TGACTCTGCTGCTCAAACTGGTAAG
LOC_Os06g18910
OsAffx.4869.1.S1_at--1068--2831Chr06:10743400..10743424 (25 bp)
AAGTACCTGGGAGCTCGTAGGCAGT
LOC_Os06g18910
Target Sequence 
TGGCCTCGATGTGATGCTCAACCTGCTACTGCAATCTTCATGCGGCCCCAAGGTTGAGGACAACAAAAAGAACATGCTAT
CATGCTGCTTCATGCAAGAAGAAGGAGGCAAGGTGTTCACTGGACGAATGTGCGCTACATTGCCATGGTGGTCCACCTGG
AGAGGAAGGTGGATCCACTTGCGTGATCAGCCATGGCTGTGGCTGAGGGGAGAAGACACCTTTGGAGGAGAACGAAGGTC
AATTCAAGCTAAATTAGCAAATCCTAGAGCTATCATCTCTAATGGATGGTATTCTATCAATCATAACAGGGACGATGGCA
TATCAGAGTGCCAGAGTGGTGACATACCACATCAATTTCCCCAATGTAAAATTAGTAGCCGGCAAGAGTTACCAACGATT
CTGAGGGACAAGTGGCTAACTGTCAGAACATGGATGACTCTGCTGCTCAAACTGGTAAGCAAAGCAATGCCAGTAACAAA
ATTAAGTACCTGGGAGCTCGTAGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis