Browse Element(s) Details


OsAffx.4880.1.S1_at

Description tigr:9634.m01959
TID=OsAffx.4880.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2018011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20140OsAffx.4879.1.S1_at11/116+11551915..11555903Eukaryotic aspartyl protease family protein
LOC_Os06g20150Os.27789.1.A1_at11/116+11558586..11559930Peroxidase 1 precursor, putative, expressed
LOC_Os06g20160Os.28943.1.S1_x_at5/116+11562590..11565813retrotransposon protein, putative, unclassified
LOC_Os06g20170NANA6+11566715..11572406retrotransposon protein, putative, unclassified
LOC_Os06g20180OsAffx.4880.1.S1_at11/116+11574999..11576595hypothetical protein
LOC_Os06g20190OsAffx.27726.1.S1_at11/116+11580192..11583433Eukaryotic aspartyl protease family protein
LOC_Os06g20190OsAffx.14464.1.S1_x_at1/116+11580192..11583433Eukaryotic aspartyl protease family protein
LOC_Os06g20200Os.22197.1.S1_at11/116+11585344..11586738serine hydrolase, putative, expressed
LOC_Os06g20210OsAffx.22940.1.S1_s_at11/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.2.S1_s_at11/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210Os.35344.3.S1_x_at10/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.5.S1_at10/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.2.S1_at9/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.5.S1_x_at9/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210Os.35344.18.S1_x_at7/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.22940.3.S1_x_at6/116+11593078..11600631transposon protein, putative, Mutator sub-class
LOC_Os06g20210OsAffx.31552.2.S1_at1/116+11593078..11600631transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4880.1.S1_at--1058--10611Chr06:11575029..11575053 (25 bp)
TTCGTCTCCGTGGTTGGCGTTGTTA
LOC_Os06g20180
OsAffx.4880.1.S1_at--838--2751Chr06:11575123..11575147 (25 bp)
AAGACAGCGTCGGTGGCGCATGCAC
LOC_Os06g20180
OsAffx.4880.1.S1_at--1013--5091Chr06:11575144..11575168 (25 bp)
GCACTGTGCGCGGTGTGTCTCATCG
LOC_Os06g20180
OsAffx.4880.1.S1_at--286--6031Chr06:11576377..11576398 (22 bp)
GAGAGGACTTATTCGCAGAGACAGA
LOC_Os06g20180
OsAffx.4880.1.S1_at--343--5031Chr06:11576410..11576434 (25 bp)
GCAGTTGCAGACTTGTTGGATTCCA
LOC_Os06g20180
OsAffx.4880.1.S1_at--1109--8811Chr06:11576423..11576447 (25 bp)
TGTTGGATTCCAGTCGCGAGTCTAT
LOC_Os06g20180
OsAffx.4880.1.S1_at--736--7231Chr06:11576435..11576459 (25 bp)
GTCGCGAGTCTATCCACAATATGCA
LOC_Os06g20180
OsAffx.4880.1.S1_at--485--2551Chr06:11576459..11576483 (25 bp)
AACTCCCATGTTGCTTTATATCATT
LOC_Os06g20180
OsAffx.4880.1.S1_at--430--251Chr06:11576476..11576500 (25 bp)
ATATCATTCGTTTTCAGCCTAGTTT
LOC_Os06g20180
OsAffx.4880.1.S1_at--80--5191Chr06:11576501..11576525 (25 bp)
GCAAGGCTGCAAGCTCAAGTCCCAA
LOC_Os06g20180
OsAffx.4880.1.S1_at--862--9851Chr06:11576534..11576558 (25 bp)
TACAGCTTCCAACAGTCAAACTCCA
LOC_Os06g20180
Target Sequence 
TTCGTCTCCGTGGTTGGCGTTGTTAGGGCCTTCGCCGCCCAGGGCATCGATGCCCTGCCCACGATCGCCTACGAGCCCGC
CGGTGCGGCAAAGAAAGACAGCGTCGGTGGCGCATGCACTGTGCGCGGTGTGTCTCATCGGGAGGAAGAGGACGAGAAAA
TAGAGGAGAGGACTTATTCGCAGAGACAGAGACTCAAAGGGGCAGTTGCAGACTTGTTGGATTCCAGTCGCGAGTCTATC
CACAATATGCAACTCCCATGTTGCTTTATATCATTCGTTTTCAGCCTAGTTTGCAAGGCTGCAAGCTCAAGTCCCAACTC
CCAACTACAGCTTCCAACAGTCAAACTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis