Browse Element(s) Details


OsAffx.4902.1.S1_at

Description tigr:9634.m02205
TID=OsAffx.4902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=75442-76969
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2249011/11Sterol desaturase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22450OsAffx.15555.1.S1_at11/116+13051783..13052172hypothetical protein
LOC_Os06g22460OsAffx.27769.1.S1_at11/116+13054163..13057028NB-ARC domain containing protein, expressed
LOC_Os06g22470OsAffx.27770.1.S1_x_at8/116+13060316..13061207hypothetical protein
LOC_Os06g22470Os.51841.1.S1_x_at1/116+13060316..13061207hypothetical protein
LOC_Os06g22480OsAffx.29300.1.S1_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22480OsAffx.28682.2.S1_x_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22480OsAffx.28682.2.S1_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22490OsAffx.4902.1.S1_at11/116+13069022..13069936Sterol desaturase family protein
LOC_Os06g22500OsAffx.27771.2.S1_s_at11/116+13073538..13074388hypothetical protein
LOC_Os06g22500OsAffx.27771.1.S1_x_at7/116+13073538..13074388hypothetical protein
LOC_Os06g22510NANA6+13078439..13081872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g22520OsAffx.22699.1.S1_x_at2/116+13082345..13089236retrotransposon protein, putative, unclassified
LOC_Os06g22520OsAffx.8279.1.S1_at1/116+13082345..13089236retrotransposon protein, putative, unclassified
LOC_Os06g22520OsAffx.31867.1.S1_x_at1/116+13082345..13089236retrotransposon protein, putative, unclassified
LOC_Os06g22520Os.52731.1.S1_at1/116+13082345..13089236retrotransposon protein, putative, unclassified
LOC_Os06g22530OsAffx.29680.1.S1_at11/116+13093273..13094006hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0016020cellular_componentmembrane
GO:0000254molecular_functionC-4 methylsterol oxidase activity
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4902.1.S1_at--205--9331Chr06:13069497..13069521 (25 bp)
TCGACGGGTGGCAGTACGCGTGGCA
LOC_Os06g22490
OsAffx.4902.1.S1_at--175--7531Chr06:13069478..13069502 (25 bp)
GTGGCACCGGTGGATGCACACCAAC
LOC_Os06g22490
OsAffx.4902.1.S1_at--688--7511Chr06:13069469..13069493 (25 bp)
GTGGATGCACACCAACCGGTTTCTG
LOC_Os06g22490
OsAffx.4902.1.S1_at--197--6331Chr06:13069466..13069490 (25 bp)
GATGCACACCAACCGGTTTCTGTAC
LOC_Os06g22490
OsAffx.4902.1.S1_at--1062--7191Chr06:13069297..13069321 (25 bp)
GTCGTCTTCTTCTCGCTGTGCACGG
LOC_Os06g22490
OsAffx.4902.1.S1_at--328--1651Chr06:13069143..13069167 (25 bp)
AGCCGTTCTTCGTGACGTGGGACAA
LOC_Os06g22490
OsAffx.4902.1.S1_at--847--5591Chr06:13069123..13069147 (25 bp)
GACAAGGTGTTAGGGACGCATATGC
LOC_Os06g22490
OsAffx.4902.1.S1_at--658--10071Chr06:13069113..13069137 (25 bp)
TAGGGACGCATATGCCCTACGTGGT
LOC_Os06g22490
OsAffx.4902.1.S1_at--983--5791Chr06:13069109..13069133 (25 bp)
GACGCATATGCCCTACGTGGTAGAG
LOC_Os06g22490
OsAffx.4902.1.S1_at--836--3571Chr06:13069105..13069129 (25 bp)
CATATGCCCTACGTGGTAGAGGAGA
LOC_Os06g22490
OsAffx.4902.1.S1_at--491--1071Chr06:13069070..13069094 (25 bp)
AGGGCTCCAAGTGCGGCCGGTGGCC
LOC_Os06g22490
Target Sequence 
TCGACGGGTGGCAGTACGCGTGGCACCGGTGGATGCACACCAACCGGTTTCTGTACCGGCGCGTCCACTCGTGGCACCAC
CGCCTCGTGGCGCCCTACGCGTTCGGCGCGCAGTACAACCACCCCGCCGAGGGCCTCCTCCTCGACACCGTCGGCGGCGC
CGTCGCCTTCCTCGCCTCCGGCATGTCGCCGCGCGCCTCCGTCGTCTTCTTCTCGCTGTGCACGGCGAAGGGCGTCGACG
ACCACTGCGGCCTGTGGCTGCCGGCGGCGAGCCCGCTCCAGCGCGTGTTCCGGAACAACGCCGCCTACCACGACGTGCAC
CATCAGCGCCGCGGCGGCCGGTACAACTTCTCGCAGCCGTTCTTCGTGACGTGGGACAAGGTGTTAGGGACGCATATGCC
CTACGTGGTAGAGGAGAGGCCTGGAGGAGGGCTCCAAGTGCGGCCGGTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis