Browse Element(s) Details


OsAffx.4911.1.S1_at

Description tigr:9634.m02265
TID=OsAffx.4911.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ZF-HD homeobox protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2303011/11ZF-HD protein dimerisation region containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22980Os.53359.1.S1_at11/116+13413642..13417273cellulose synthase family protein, putative, expressed
LOC_Os06g22980Os.57510.1.S1_x_at1/116+13413642..13417273cellulose synthase family protein, putative, expressed
LOC_Os06g22990Os.41695.4.S1_x_at4/116+13418088..13422242hypothetical protein
LOC_Os06g22990Os.41695.3.S1_x_at1/116+13418088..13422242hypothetical protein
LOC_Os06g22990Os.41695.2.S1_x_at1/116+13418088..13422242hypothetical protein
LOC_Os06g23010OsAffx.4909.1.S1_at11/116+13427643..13430617hypothetical protein
LOC_Os06g23020OsAffx.4910.1.S1_at11/116+13433832..13434940hypothetical protein
LOC_Os06g23030OsAffx.4911.1.S1_x_at11/116+13438252..13438923ZF-HD protein dimerisation region containing protein
LOC_Os06g23030OsAffx.4911.1.S1_at11/116+13438252..13438923ZF-HD protein dimerisation region containing protein
LOC_Os06g23040OsAffx.15568.1.S1_at11/116+13439853..13441507expressed protein
LOC_Os06g23040Os.49364.1.A1_x_at1/116+13439853..13441507expressed protein
LOC_Os06g23050OsAffx.15569.1.S1_at11/116+13443122..13443592AP2 domain containing protein
LOC_Os06g23060OsAffx.15570.1.S1_at11/116+13446100..13446756hypothetical protein
LOC_Os06g23070OsAffx.22368.1.S1_x_at1/116+13447494..13452398retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g23080OsAffx.20628.1.S1_at3/116+13453972..13456878retrotransposon protein, putative, unclassified
LOC_Os06g23090OsAffx.15571.1.S1_at10/116+13463026..13468259hypothetical protein
LOC_Os06g23090Os.50619.1.S1_at1/116+13463026..13468259hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4911.1.S1_at--1088--7234Chr07:28412174..28412317 (25 bp)
GTCGCCGGAGACATGGCTGAGCTAC
NONE
OsAffx.4911.1.S1_at--387--1951Chr06:13438460..13438484 (25 bp)
ACGGCCAGCTGCACCGCGAGGAGGA
LOC_Os06g23030
OsAffx.4911.1.S1_at--327--8391Chr06:13438404..13438428 (25 bp)
GGCGACGAGTCTGACAACAACTCGG
LOC_Os06g23030
OsAffx.4911.1.S1_at--68--5631Chr06:13438392..13438416 (25 bp)
GACAACAACTCGGATGGCTCGGAAT
LOC_Os06g23030
OsAffx.4911.1.S1_at--863--3231Chr06:13438387..13438411 (25 bp)
CAACTCGGATGGCTCGGAATACTAC
LOC_Os06g23030
OsAffx.4911.1.S1_at--1108--3951Chr06:13438382..13438406 (25 bp)
CGGATGGCTCGGAATACTACGACGA
LOC_Os06g23030
OsAffx.4911.1.S1_at--618--4491Chr06:13438318..13438342 (25 bp)
GCCGGTGGTGCACCAGCCGTATTAC
LOC_Os06g23030
OsAffx.4911.1.S1_at--289--6651Chr06:13438315..13438339 (25 bp)
GGTGGTGCACCAGCCGTATTACCCT
LOC_Os06g23030
OsAffx.4911.1.S1_at--588--4031Chr06:13438301..13438325 (25 bp)
CGTATTACCCTTCGGCGCAGCACAT
LOC_Os06g23030
OsAffx.4911.1.S1_at--587--10611Chr06:13438291..13438315 (25 bp)
TTCGGCGCAGCACATGCTACTCTCG
LOC_Os06g23030
OsAffx.4911.1.S1_at--1081--1491Chr06:13438283..13438307 (25 bp)
AGCACATGCTACTCTCGCTGGGCTC
LOC_Os06g23030
Target Sequence 
GTCGCCGGAGACATGGCTGAGCTACAGCTGCGACGAGCACAGCCGGCGGTGGGCGGAGGAGAGACGGTGTACCAGGAGTG
CCCCAAGAACCACGCAGCGAGCCTGGGCGGACACGGCGCTGGACGGCTGCGAGGAGTTCATGCCGTCGTCGGCGGTGAAC
CCACCGACCCGACGTCGCTCATGTGCGCCGCGTGCGGCTGCCACTGCAACTTCCACTGCTGGCTGCTGGAGGGGTCCCCG
CCGCCGCCTCCGCCGCTGGCGCTGCCCGCGCCGCCCATGCCGGCGAACGTGCTCCACGGCCAGCTGCACCGCGAGGAGGA
GACGCCCGAGGTCCGGCTCCCTGGGGTTGATGGCGACGAGTCTGACAACAACTCGGATGGCTCGGAATACTACGACGAGC
GGTCTGTGTCCCCGCCGTCGCCACCGCACCTGCCGGCGCCGGTGGTGCACCAGCCGTATTACCCTTCGGCGCAGCACATG
CTACTCTCGCTGGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis