Browse Element(s) Details


OsAffx.4990.1.S1_at

Description tigr:9634.m03139
TID=OsAffx.4990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3347011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33440OsAffx.19542.3.S1_x_at7/116+19479341..19480863retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g33450OsAffx.4988.1.S1_at10/116+19487393..19493211Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g33450OsAffx.2630.1.S1_x_at1/116+19487393..19493211Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g33460OsAffx.4989.1.S1_at11/116+19494981..19495397hypothetical protein
LOC_Os06g33470OsAffx.4990.1.S1_at11/116+19499408..19502109expressed protein
LOC_Os06g33470OsAffx.24962.1.S1_at1/116+19499408..19502109expressed protein
LOC_Os06g33480Os.35524.1.S2_at1/116+19502410..19505419CAPIP1, putative
LOC_Os06g33490OsAffx.4991.1.S1_at11/116+19507721..19510237CAPIP1, putative
LOC_Os06g33499NANA6+19511072..19511723NA
LOC_Os06g33510OsAffx.4992.1.S1_at11/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_x_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33520OsAffx.27916.1.S1_at11/116+19515633..19523705DEAD box RNA helicase, putative, expressed
LOC_Os06g33530OsAffx.4993.1.S1_at11/116+19525784..19528695Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4990.1.S1_at--65--10211Chr06:19500856..19500880 (25 bp)
TATATTGGACTTCAGATCTTCTTTG
LOC_Os06g33470
OsAffx.4990.1.S1_at--1098--8951Chr06:19500879..19500903 (25 bp)
TGAAAGCCTGGAAAGCTCACCGAGG
LOC_Os06g33470
OsAffx.4990.1.S1_at--1010--8611Chr06:19501036..19501060 (25 bp)
TGGTGAGAAGCCAGTCGCCCATATG
LOC_Os06g33470
OsAffx.4990.1.S1_at--383--591Chr06:19501058..19501082 (25 bp)
ATGCCATACTACCATAGCATGCCAC
LOC_Os06g33470
OsAffx.4990.1.S1_at--583--9491Chr06:19501144..19501356 (25 bp)
TCTCCGATGGAGTTACTTTGCCCGA
LOC_Os06g33470
OsAffx.4990.1.S1_at--251--10471Chr06:19501344..19501368 (25 bp)
TTACTTTGCCCGACAGCTATTATGG
LOC_Os06g33470
OsAffx.4990.1.S1_at--248--5351Chr06:19501401..19501425 (25 bp)
GAAGCGGAAACGGAGCCACTGCCAT
LOC_Os06g33470
OsAffx.4990.1.S1_at--865--3631Chr06:19501439..19501463 (25 bp)
CTTCCTCGTGTTGCCGTGGATTTGA
LOC_Os06g33470
OsAffx.4990.1.S1_at--387--1151Chr06:19501466..19501490 (25 bp)
AGTCGACTTGTGTTAGTGCTCTGGA
LOC_Os06g33470
OsAffx.4990.1.S1_at--491--8191Chr06:19501521..19501545 (25 bp)
GGAAGCTTTCCATCACCGTATGAGA
LOC_Os06g33470
OsAffx.4990.1.S1_at--866--9751Chr06:19502018..19502042 (25 bp)
TAATCAGCGCCGATCAAGGAGCTCC
LOC_Os06g33470
Target Sequence 
TATATTGGACTTCAGATCTTCTTTGAAAGCCTGGAAAGCTCACCGAGGCTGCAAGACTGCAATAGTTGGAGCAAGACCGA
AGAGAATCGCCCATATGGTGAGAAGCCAGTCGCCCATATGCCATACTACCATAGCATGCCACCTCCGCTCTGCTTCCTGC
CCATGCCCACTATTGCTTCCGCGCGGCACTCAGACATTCACCTTCTCCGATGGAGTTACTTTGCCCGACAGCTATTATGG
CAGAATCTAAAGATGAATCGGATGCAAAAGCTGAAGCGGAAACGGAGCCACTGCCATGTCCCTTCGGTTCCTTCCTCGTG
TTGCCGTGGATTTGAACAGTCGACTTGTGTTAGTGCTCTGGATGTCGAACATATGCGGATGCGAGGCGGCGGGGAAGCTT
TCCATCACCGTATGAGAATGGGCCGAGAAGAAGCTTTAGTAATCAGCGCCGATCAAGGAGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis