Browse Element(s) Details


OsAffx.5020.1.S1_at

Description tigr:9634.m03375
TID=OsAffx.5020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3566011/11Reticuline oxidase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35639NANA6+20787240..20788926NA
LOC_Os06g35650Os.53599.1.S1_at11/116+20807197..20809008Reticuline oxidase precursor, putative, expressed
LOC_Os06g35650OsAffx.11451.4.S1_x_at1/116+20807197..20809008Reticuline oxidase precursor, putative, expressed
LOC_Os06g35660OsAffx.5020.1.S1_at11/116+20811524..20813110Reticuline oxidase precursor, putative
LOC_Os06g35670Os.9858.1.S1_at11/116+20820744..20824188expressed protein
LOC_Os06g35670Os.9858.2.S1_x_at3/116+20820744..20824188expressed protein
LOC_Os06g35690OsAffx.20313.1.S1_x_at4/116+20828124..20828847hypothetical protein
LOC_Os06g35700Os.27507.1.S1_at10/116+20831523..20833494Reticuline oxidase precursor, putative, expressed
LOC_Os06g35700OsAffx.11451.4.S1_x_at1/116+20831523..20833494Reticuline oxidase precursor, putative, expressed
LOC_Os06g35700Os.47789.1.A1_at1/116+20831523..20833494Reticuline oxidase precursor, putative, expressed
LOC_Os06g35710OsAffx.22947.1.S1_x_at11/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710OsAffx.22947.2.S1_x_at4/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710OsAffx.22947.3.S1_x_at3/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710OsAffx.22947.5.S1_x_at3/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5020.1.S1_at--142--8091Chr06:20812017..20812041 (25 bp)
GGAGCTCCATCTCCAGGGTGAACAC
LOC_Os06g35660
OsAffx.5020.1.S1_at--986--2391Chr06:20811990..20812014 (25 bp)
AAAACCGATCCGACTACGTCAGGCA
LOC_Os06g35660
OsAffx.5020.1.S1_at--421--4831Chr06:20811926..20811950 (25 bp)
GCTACAACAGCTAACCAACTTCGGT
LOC_Os06g35660
OsAffx.5020.1.S1_at--633--1011Chr06:20811900..20811924 (25 bp)
AGGTTCAGCTGTTCATAGACCCCTA
LOC_Os06g35660
OsAffx.5020.1.S1_at--157--2811Chr06:20811868..20811892 (25 bp)
AAGATCAGCCGCATCCATGAATCCG
LOC_Os06g35660
OsAffx.5020.1.S1_at--629--5131Chr06:20811775..20811799 (25 bp)
GCAAATGGCACACTGGCTCTGAAGT
LOC_Os06g35660
OsAffx.5020.1.S1_at--725--8531Chr06:20811726..20811750 (25 bp)
TGGAGCCCTACGTGAGCAAGAACCC
LOC_Os06g35660
OsAffx.5020.1.S1_at--845--2111Chr06:20811681..20811705 (25 bp)
ACAGGGACCTTGATCTTGGGAGGAA
LOC_Os06g35660
OsAffx.5020.1.S1_at--1090--2451Chr06:20811658..20811682 (25 bp)
AACAAGGTGGTGAACGGCATCAGCA
LOC_Os06g35660
OsAffx.5020.1.S1_at--1067--391Chr06:20811640..20811664 (25 bp)
ATCAGCAGCTATCACCATGGCAAGG
LOC_Os06g35660
OsAffx.5020.1.S1_at--826--1411Chr06:20811606..20811630 (25 bp)
AGAAGTATTTCAGGGCCAATTTCGA
LOC_Os06g35660
Target Sequence 
GGAGCTCCATCTCCAGGGTGAACACCAAAAACCGATCCGACTACGTCAGGCACCCCATCCCAAAGTCCATTTGGAAGAAG
ATCTTCGCCAAGCTACAACAGCTAACCAACTTCGGTGAGGTTCAGCTGTTCATAGACCCCTACGGTGCCAAGATCAGCCG
CATCCATGAATCCGCGACACCGTTCCCGCACCGGGAAGGCGTCCTGTACAACATCCAGTACATCACGTACTGGAACGGTG
ATGCAAATGGCACACTGGCTCTGAAGTGGAGCAGGGACCTGTACAAGTTCATGGAGCCCTACGTGAGCAAGAACCCCAGG
GAGGCGTATGCCAACTACAGGGACCTTGATCTTGGGAGGAACAAGGTGGTGAACGGCATCAGCAGCTATCACCATGGCAA
GGTTTGGGGGGAGAAGTATTTCAGGGCCAATTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis