Browse Element(s) Details


OsAffx.5037.1.S1_at

Description tigr:9634.m03604
TID=OsAffx.5037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g378009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37730NANA6+22344146..22347086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37740OsAffx.15804.1.S1_at11/116+22348654..22349127hypothetical protein
LOC_Os06g37750Os.49844.1.S1_at9/116+22351090..22353760D-mannose binding lectin family protein, expressed
LOC_Os06g37760OsAffx.30677.3.S1_x_at11/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37760OsAffx.30677.4.S1_x_at7/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37770NANA6+22360236..22360676hypothetical protein
LOC_Os06g37780OsAffx.17964.1.S1_x_at1/116+22361324..22361713hypothetical protein
LOC_Os06g37790OsAffx.30677.1.S1_x_at5/116+22363636..22366815hypothetical protein
LOC_Os06g37790OsAffx.30677.5.S1_x_at4/116+22363636..22366815hypothetical protein
LOC_Os06g37790Os.53605.1.S1_at2/116+22363636..22366815hypothetical protein
LOC_Os06g37800OsAffx.5037.1.S1_at9/116+22369943..22370245hypothetical protein
LOC_Os06g37810OsAffx.15805.1.S1_at11/116+22374264..22374920resistance protein, putative
LOC_Os06g37820OsAffx.15806.1.S1_at11/116+22375669..22386249Leucine Rich Repeat family protein
LOC_Os06g37830OsAffx.30016.1.S1_at1/116+22387370..22389896transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5037.1.S1_at--1142--991Chr06:22369877..22369901 (25 bp)
AGGTTCACGGCCATCTACGTCTCCA
NONE
OsAffx.5037.1.S1_at--843--4991Chr06:22369932..22369956 (25 bp)
GCATGTCGGCGATGACGTTGTCGAA
NONE
OsAffx.5037.1.S1_at--581--2131Chr06:22369979..22370003 (25 bp)
ACAGCCAACCGGTGGTTCTTCCTAG
LOC_Os06g37800
OsAffx.5037.1.S1_at--35--10071Chr06:22370001..22370025 (25 bp)
TAGTCGCCGCGATCAGGATAACCAG
LOC_Os06g37800
OsAffx.5037.1.S1_at--698--6431Chr06:22370011..22370035 (25 bp)
GATCAGGATAACCAGCGCCCTCTCG
LOC_Os06g37800
OsAffx.5037.1.S1_at--240--9071Chr06:22370039..22370063 (25 bp)
TGCTTGCTTGCCTGCGCGGTGCTCG
LOC_Os06g37800
OsAffx.5037.1.S1_at--272--4451Chr06:22370105..22370129 (25 bp)
GCCTTCGTGCTGCTAGCCATTACAT
LOC_Os06g37800
OsAffx.5037.1.S1_at--917--9051Chr06:22370115..22370139 (25 bp)
TGCTAGCCATTACATCCCTCGTCTT
LOC_Os06g37800
OsAffx.5037.1.S1_at--189--4031Chr06:22370150..22370174 (25 bp)
CGTCACTGTGTTCCCAGCGGCCGGT
LOC_Os06g37800
OsAffx.5037.1.S1_at--397--3971Chr06:22370171..22370195 (25 bp)
CGGTCCGACCTGCTGGATGGTCAAC
LOC_Os06g37800
OsAffx.5037.1.S1_at--228--9131Chr06:22370181..22370205 (25 bp)
TGCTGGATGGTCAACCGGAGCCAGA
LOC_Os06g37800
Target Sequence 
AGGTTCACGGCCATCTACGTCTCCATCTTCTTCATGTTCTCCACCGCCATCGTCGGCATGTCGGCGATGACGTTGTCGAA
GAGGGCCGTGAACGTCGCCGCCACAGCCAACCGGTGGTTCTTCCTAGTCGCCGCGATCAGGATAACCAGCGCCCTCTCGC
TCTGCTTGCTTGCCTGCGCGGTGCTCGCGGCGTCCTACGTCGTCCTCGGGTACTTCCTCATGCTCGCCGCCTTCGTGCTG
CTAGCCATTACATCCCTCGTCTTCCTCCTCCTCCGTCACTGTGTTCCCAGCGGCCGGTCCGACCTGCTGGATGGTCAACC
GGAGCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis