Browse Element(s) Details


OsAffx.5068.1.S1_at

Description tigr:9634.m03880
TID=OsAffx.5068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4043011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40400NANA6+24055973..24056977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40410Os.46306.1.S1_x_at8/116+24060015..24066602transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g40420OsAffx.28023.2.S1_at11/116+24075180..24076128hypothetical protein
LOC_Os06g40420OsAffx.28023.2.S1_s_at11/116+24075180..24076128hypothetical protein
LOC_Os06g40420OsAffx.28023.1.S1_at2/116+24075180..24076128hypothetical protein
LOC_Os06g40430OsAffx.28024.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40430OsAffx.5068.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40440Os.11307.1.S1_at11/116+24088906..24090220expressed protein
LOC_Os06g40440OsAffx.4053.1.S1_at1/116+24088906..24090220expressed protein
LOC_Os06g40450Os.49516.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_s_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40460Os.52578.1.S1_x_at11/116+24101989..24107136expressed protein
LOC_Os06g40460OsAffx.15860.1.S1_at11/116+24101989..24107136expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5068.1.S1_at--288--5351Chr06:24083986..24084010 (25 bp)
GAAGACGAAATCGTTGTTGGCGCCG
LOC_Os06g40430
OsAffx.5068.1.S1_at--588--4071Chr06:24084009..24084033 (25 bp)
CGAGCAGCACGGCTCCGAAGAAGAC
LOC_Os06g40430
OsAffx.5068.1.S1_at--186--1511Chr06:24084014..24084038 (25 bp)
AGCACGGCTCCGAAGAAGACGAAGG
LOC_Os06g40430
OsAffx.5068.1.S1_at--505--5311Chr06:24084034..24084058 (25 bp)
GAAGGAGACATCGAAACGTGCAAAA
LOC_Os06g40430
OsAffx.5068.1.S1_at--275--1651Chr06:24084041..24084065 (25 bp)
ACATCGAAACGTGCAAAACAAGAGT
LOC_Os06g40430
OsAffx.5068.1.S1_at--50--2231Chr06:24084058..24084082 (25 bp)
ACAAGAGTTATTTGGCTCTGGCAGC
LOC_Os06g40430
OsAffx.5068.1.S1_at--284--6071Chr06:24084062..24084086 (25 bp)
GAGTTATTTGGCTCTGGCAGCTGGT
LOC_Os06g40430
OsAffx.5068.1.S1_at--979--10411Chr06:24084065..24084089 (25 bp)
TTATTTGGCTCTGGCAGCTGGTGGC
LOC_Os06g40430
OsAffx.5068.1.S1_at--719--10851Chr06:24084069..24084093 (25 bp)
TTGGCTCTGGCAGCTGGTGGCAACT
LOC_Os06g40430
OsAffx.5068.1.S1_at--898--4711Chr06:24084081..24084105 (25 bp)
GCTGGTGGCAACTAGGGCTGTCAAC
LOC_Os06g40430
OsAffx.5068.1.S1_at--296--8631Chr06:24084083..24084107 (25 bp)
TGGTGGCAACTAGGGCTGTCAACAA
LOC_Os06g40430
Target Sequence 
GAAGACGAAATCGTTGTTGGCGCCGAGCAGCACGGCTCCGAAGAAGACGAAGGAGACATCGAAACGTGCAAAACAAGAGT
TATTTGGCTCTGGCAGCTGGTGGCAACTAGGGCTGTCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis