Browse Element(s) Details


OsAffx.5116.1.S1_at

Description gb:NM_185188.1
DB_XREF= gi:34897461
TID=OsAffx.5116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0096M04.85), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6317010/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63124Os.28346.5.S1_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.5.S1_x_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.3.S1_x_at10/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.4.S1_x_at8/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63140Os.8727.1.S1_at10/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63140OsAffx.25806.1.S1_at2/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63150Os.35787.2.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_x_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63160OsAffx.25806.1.S1_at11/113+35641868..35642997hypothetical protein
LOC_Os03g63170OsAffx.5116.1.S1_at10/113+35643625..35645941transposon protein, putative, unclassified
LOC_Os03g63190NANA3+35648360..35649242hypothetical protein
LOC_Os03g63200Os.44928.1.S1_at11/113+35650256..35654709powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63210OsAffx.25807.1.S1_at11/113+35657592..35658741hypothetical protein
LOC_Os03g63210Os.52410.1.S1_x_at1/113+35657592..35658741hypothetical protein
LOC_Os03g63220Os.44928.1.S1_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63220Os.35787.1.S1_x_at2/113+35664909..35666128Leucine Rich Repeat family protein
LOC_Os03g63230OsAffx.22641.1.S1_at11/113+35666801..35668212retrotransposon protein, putative, LINE subclass
LOC_Os03g63240Os.49396.1.S1_x_at1/113+35668814..35671051NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5116.1.S1_at--699--10771NONE
TTGTGATGCAGTGAAGCCCGGTACC
NONE
OsAffx.5116.1.S1_at--10--7332Chr06:27617756..27617780 (25 bp)
GTGAAGCCCGGTACCAAATGTGGAC
NONE
OsAffx.5116.1.S1_at--583--6232Chr06:27617800..27617824 (25 bp)
GATGGCTGACATCAATTGGTACCTT
NONE
OsAffx.5116.1.S1_at--795--5871Chr03:35645714..35645738 (25 bp)
GAGCCGACGACGCTTCAGGAATTGC
LOC_Os03g63170
OsAffx.5116.1.S1_at--958--931Chr03:35645730..35645754 (25 bp)
AGGAATTGCGGTGCGCTCCACCAGT
LOC_Os03g63170
OsAffx.5116.1.S1_at--371--8432Chr06:27618021..27618045 (25 bp)
GGCCACAACGGTGCTCCAGGAGTTG
NONE
OsAffx.5116.1.S1_at--717--9232Chr06:27618035..27618059 (25 bp)
TCCAGGAGTTGTTGTCAGCGGCGAC
NONE
OsAffx.5116.1.S1_at--33--4951Chr03:35645808..35645832 (25 bp)
GCATTCCAGGAGTTATCGGCAGCGA
LOC_Os03g63170
OsAffx.5116.1.S1_at--583--8351Chr03:35645834..35645858 (25 bp)
GGCGGCGCTCCAGGAATCATCTGCA
LOC_Os03g63170
OsAffx.5116.1.S1_at--400--8351Chr03:35645864..35645888 (25 bp)
GGCGGCAGCGCTCCAATAATTGTCT
LOC_Os03g63170
OsAffx.5116.1.S1_at--1162--5931Chr03:35645875..35645899 (25 bp)
TCCAATAATTGTCTTCGGCGACGAC
LOC_Os03g63170
Target Sequence 
TTGTGATGCAGTGAAGCCCGGTACCAAATGTGGACCGTTGGATAGGTATGATCGGATGGCTGACATCAATTGGTACCTTC
AGAGGAAAATCTGCGGCAGTGGCGGCGAGCCGACGACGCTTCAGGAATTGCGGTGCGCTCCACCAGTCTTCTGCGGCCAC
AACGGTGCTCCAGGAGTTGTTGTCAGCGGCGACGACGGCGGCATTCCAGGAGTTATCGGCAGCGATGGCGGCGCTCCAGG
AATCATCTGCAGCTGCGGCGGCAGCGCTCCAATAATTGTCTTCGGCGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis