Browse Element(s) Details


OsAffx.5122.1.S1_at

Description tigr:9634.m04480
TID=OsAffx.5122.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4607010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46040NANA6+27907808..27908884retrotransposon protein, putative, unclassified
LOC_Os06g46050OsAffx.15945.1.S1_at11/116+27914460..27915050hypothetical protein
LOC_Os06g46060Os.49463.1.S1_at11/116+27922527..27925282expressed protein
LOC_Os06g46060OsAffx.15946.1.S1_x_at2/116+27922527..27925282expressed protein
LOC_Os06g46070OsAffx.5122.1.S1_at10/116+27933526..27934660hypothetical protein
LOC_Os06g46080OsAffx.28128.1.S1_at11/116+27940760..27941132hypothetical protein
LOC_Os06g46090OsAffx.28129.1.S1_x_at10/116+27944401..27945106expressed protein
LOC_Os06g46090OsAffx.28129.1.S1_at10/116+27944401..27945106expressed protein
LOC_Os06g46100OsAffx.28130.1.S1_at11/116+27947244..27947888hypothetical protein
LOC_Os06g46100OsAffx.27736.1.S1_at2/116+27947244..27947888hypothetical protein
LOC_Os06g46110OsAffx.5123.1.S1_at11/116+27948954..27949217hypothetical protein
LOC_Os06g46120OsAffx.15946.1.S1_x_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.18037.1.S1_at11/116+27952478..27959356Ubiquitin family protein, expressed
LOC_Os06g46120Os.48093.1.S1_at10/116+27952478..27959356Ubiquitin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5122.1.S1_at--630--2251Chr06:27933705..27933729 (25 bp)
AAATCAACCAAACTCGGCGTCCACT
LOC_Os06g46070
OsAffx.5122.1.S1_at--837--7271Chr06:27933723..27933747 (25 bp)
GTCCACTCCAGATGCGGATGCGGAT
LOC_Os06g46070
OsAffx.5122.1.S1_at--484--6353Chr06:27933733..27933757 (25 bp)
GATGCGGATGCGGATCCTCTGACTT
LOC_Os06g46070
OsAffx.5122.1.S1_at--754--7972Chr06:27933744..27933768 (25 bp)
GGATCCTCTGACTTTACTTGCTAAA
LOC_Os06g46070
OsAffx.5122.1.S1_at--1085--10331Chr06:27933756..27934257 (25 bp)
TTTACTTGCTAAAGTCACGATTAGA
LOC_Os06g46070
OsAffx.5122.1.S1_at--925--2831NONE
AAGTCACGATTAGAGGATCAGCAAT
NONE
OsAffx.5122.1.S1_at--1115--6151Chr06:27934558..27934581 (24 bp)
GAGGATCAGCAATCAAGGCATTTAA
LOC_Os06g46070
OsAffx.5122.1.S1_at--152--5191Chr06:27934565..27934589 (25 bp)
GCAATCAAGGCATTTAATGGCTCGA
LOC_Os06g46070
OsAffx.5122.1.S1_at--728--2951Chr06:27934580..27934604 (25 bp)
AATGGCTCGAAAGTAGCCCGCGGGA
LOC_Os06g46070
OsAffx.5122.1.S1_at--292--6971Chr06:27934592..27934616 (25 bp)
GTAGCCCGCGGGAGATATCCTCCGT
LOC_Os06g46070
OsAffx.5122.1.S1_at--545--253Chr07:20539617..20539638 (22 bp)
ATATCCTCCGTTGGATGAGTCGGAC
NONE
Target Sequence 
AAATCAACCAAACTCGGCGTCCACTCCAGATGCGGATGCGGATCCTCTGACTTTACTTGCTAAAGTCACGATTAGAGGAT
CAGCAATCAAGGCATTTAATGGCTCGAAAGTAGCCCGCGGGAGATATCCTCCGTTGGATGAGTCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis