Browse Element(s) Details


OsAffx.5221.1.S1_at

Description tigr:9635.m00490
TID=OsAffx.5221.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g055209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05490NANA7+2559634..2562042transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05500OsAffx.28291.1.S1_at10/117+2563740..2565574hypothetical protein
LOC_Os07g05500Os.4779.1.S1_at1/117+2563740..2565574hypothetical protein
LOC_Os07g05510OsAffx.16098.1.S1_at10/117+2567834..2568853hypothetical protein
LOC_Os07g05520OsAffx.5221.1.S1_at9/117+2574494..2576913hypothetical protein
LOC_Os07g05530OsAffx.16099.1.S1_at11/117+2578517..2579311hypothetical protein
LOC_Os07g05540OsAffx.5954.4.S1_x_at4/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.1.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.5.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.3.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.2.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.25503.1.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05550Os.49224.1.S1_at11/117+2594019..2597171expressed protein
LOC_Os07g05560OsAffx.5222.1.S1_at11/117+2597362..2599140pentatricopeptide, putative, expressed
LOC_Os07g05570Os.4890.1.S1_at11/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05570OsAffx.31218.1.S1_at1/117+2599490..2604517ERD4 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5221.1.S1_at--893--7491Chr07:2576846..2576870 (25 bp)
GTGGAGGAAGGACCAACAACGGCCA
LOC_Os07g05520
OsAffx.5221.1.S1_at--289--3251Chr07:2576830..2576854 (25 bp)
CAACGGCCAGGCTCGGCAGTGGAAA
LOC_Os07g05520
OsAffx.5221.1.S1_at--766--6974Chr07:2575280..2575304 (25 bp)
GTACCCGTCGACAGTGAGACGCCTA
LOC_Os07g05520
OsAffx.5221.1.S1_at--934--9351Chr07:2575273..2575297 (25 bp)
TCGACAGTGAGACGCCTATAGTGAC
LOC_Os07g05520
OsAffx.5221.1.S1_at--1154--3452Chr09:16306037..16306057 (21 bp)
CAGTGAGACGCCTATAGTGACTTCG
NONE
OsAffx.5221.1.S1_at--581--8892Chr09:16306035..16306057 (23 bp)
TGAGACGCCTATAGTGACTTCGTCA
NONE
OsAffx.5221.1.S1_at--284--3931NONE
CGGCCCAGTCTTCGAGATCGCTTTG
NONE
OsAffx.5221.1.S1_at--625--3451NONE
CAGTCTTCGAGATCGCTTTGCTTTG
NONE
OsAffx.5221.1.S1_at--233--3651Chr07:2574566..2574585 (20 bp)
CTTCGAGATCGCTTTGCTTTGTGTG
LOC_Os07g05520
OsAffx.5221.1.S1_at--399--9111Chr07:2574543..2574567 (25 bp)
TGCGGAGAGGTGGAGTTCCCAACCT
LOC_Os07g05520
OsAffx.5221.1.S1_at--226--8051Chr07:2574540..2574564 (25 bp)
GGAGAGGTGGAGTTCCCAACCTCCA
LOC_Os07g05520
Target Sequence 
GTGGAGGAAGGACCAACAACGGCCAGGCTCGGCAGTGGAAAGGGGAACCGTGGCGGGCTCAGCGGTGGCAAGGAGAAGTG
GTAGGCGATGTACCCGTCGACAGTGAGACGCCTATAGTGACTTCGTCAATCTCTCCAGGATTTGCCGGCCCAGTCTTCGA
GATCGCTTTGCTTTGTGTGCGGAGAGGTGGAGTTCCCAACCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis