Browse Element(s) Details


OsAffx.5232.1.S1_at

Description tigr:9635.m00585
TID=OsAffx.5232.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0646011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06365NANA7+3093372..3099467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06380OsAffx.28306.1.S1_x_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06380OsAffx.28306.1.S1_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06390Os.52911.1.S1_at11/117+3103584..3107790expressed protein
LOC_Os07g06390Os.10342.1.S1_s_at1/117+3103584..3107790expressed protein
LOC_Os07g06400OsAffx.16122.1.S1_at11/117+3108246..3109085hypothetical protein
LOC_Os07g06410Os.49488.1.S1_at11/117+3109954..3112260expressed protein
LOC_Os07g06410OsAffx.29070.1.S1_at8/117+3109954..3112260expressed protein
LOC_Os07g06420NANA7+3113757..3113975expressed protein
LOC_Os07g06430OsAffx.5727.1.S1_at11/117+3114724..3115479hypothetical protein
LOC_Os07g06440OsAffx.29070.1.S1_s_at11/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.5861.1.S1_at10/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_at5/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_x_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.49488.1.S1_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06450Os.12608.1.S1_at11/117+3120928..3122903RNA recognition motif family protein, expressed
LOC_Os07g06460OsAffx.5232.1.S1_s_at11/117+3123214..3124011expressed protein
LOC_Os07g06460OsAffx.5232.1.S1_at11/117+3123214..3124011expressed protein
LOC_Os07g06470OsAffx.5233.1.S1_at11/117+3126100..3128469CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os07g06480OsAffx.28307.1.S1_at11/117+3128829..3129099hypothetical protein
LOC_Os07g06490Os.54677.1.S1_at11/117+3148558..3150943expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5232.1.S1_at--230--6131Chr07:3123412..3123436 (25 bp)
GAGTGTGGGTTCTGCTTGTTCATGA
LOC_Os07g06460
OsAffx.5232.1.S1_at--141--1811Chr07:3123538..3123562 (25 bp)
ACCGCCAACCTCAAGAGGTGCATGG
LOC_Os07g06460
OsAffx.5232.1.S1_at--335--1751Chr07:3123545..3123569 (25 bp)
ACCTCAAGAGGTGCATGGACGCGCA
LOC_Os07g06460
OsAffx.5232.1.S1_at--40--9731Chr07:3123548..3123572 (25 bp)
TCAAGAGGTGCATGGACGCGCACGC
LOC_Os07g06460
OsAffx.5232.1.S1_at--396--9051Chr07:3123556..3123580 (25 bp)
TGCATGGACGCGCACGCGGACTACT
LOC_Os07g06460
OsAffx.5232.1.S1_at--1048--3491Chr07:3123558..3123582 (25 bp)
CATGGACGCGCACGCGGACTACTAC
LOC_Os07g06460
OsAffx.5232.1.S1_at--697--4511Chr07:3123598..3123622 (25 bp)
GCCGAGCAGGCCGTCAACGACCACG
LOC_Os07g06460
OsAffx.5232.1.S1_at--760--1451Chr07:3123665..3123689 (25 bp)
AGAAGAAGCTAGATGCGGTGGCCCA
LOC_Os07g06460
OsAffx.5232.1.S1_at--66--1571Chr07:3123671..3123695 (25 bp)
AGCTAGATGCGGTGGCCCAGGAGGC
LOC_Os07g06460
OsAffx.5232.1.S1_at--1097--2451Chr07:3123719..3123743 (25 bp)
AACAACAGGTTGAGGAGAAGTCGTC
LOC_Os07g06460
OsAffx.5232.1.S1_at--455--2491Chr07:3123722..3123746 (25 bp)
AACAGGTTGAGGAGAAGTCGTCGTC
LOC_Os07g06460
Target Sequence 
GAGTGTGGGTTCTGCTTGTTCATGAAGGGAGGGGGATGCAAGGAGGCGTTCGTGGCGTGGGAGGAGTGCGTGGAGGCGGC
GGGGAAGGAGGAGGGCTCCGACATGGTGGAGCGCTGCTTCGAGGTCACCGCCAACCTCAAGAGGTGCATGGACGCGCACG
CGGACTACTACGCCCCCGTGCTCCGCGCCGAGCAGGCCGTCAACGACCACGCCGACGCCGCCATCGCCGCCGACAAGGCA
AAGGAAGGCGGGGAGAAGAAGCTAGATGCGGTGGCCCAGGAGGCCGCGTCCGCCGCCGACGAGAAGAAACAACAGGTTGA
GGAGAAGTCGTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis