Browse Element(s) Details


OsAffx.5312.1.S1_s_at

Description tigr:9635.m01310
TID=OsAffx.5312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1328011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13260Os.35204.1.S1_at11/117+7602407..7604002Dof domain, zinc finger family protein, expressed
LOC_Os07g13270Os.10804.1.S1_at11/117+7619801..7624987SNF7 family protein, expressed
LOC_Os07g13280OsAffx.5312.1.S1_s_at11/117+7625853..7627486expressed protein
LOC_Os07g13290OsAffx.5313.1.S1_at3/117+7629167..7629699hypothetical protein
LOC_Os07g13300NANA7+7630626..7633409RNA recognition motif family protein, expressed
LOC_Os07g13310OsAffx.10198.2.A1_at11/117+7634671..7635716hypothetical protein
LOC_Os07g13319OsAffx.1448.1.S1_at11/117+7636890..7638222hypothetical protein
LOC_Os07g13319OsAffx.20869.1.S1_at1/117+7636890..7638222hypothetical protein
LOC_Os07g13330OsAffx.22422.1.S1_at11/117+7644046..7644327hypothetical protein
LOC_Os07g13340NANA7+7646670..7655594retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5312.1.S1_s_at--456--3291Chr07:7626144..7626168 (25 bp)
CAAAGAGGACAATTTCATCAAGGTA
LOC_Os07g13280
OsAffx.5312.1.S1_s_at--100--3131Chr07:7626134..7626158 (25 bp)
AATTTCATCAAGGTAATGGTCGCCC
LOC_Os07g13280
OsAffx.5312.1.S1_s_at--60--10551Chr07:7626131..7626155 (25 bp)
TTCATCAAGGTAATGGTCGCCCTGG
LOC_Os07g13280
OsAffx.5312.1.S1_s_at--604--9731Chr07:7626127..7626151 (25 bp)
TCAAGGTAATGGTCGCCCTGGAAAC
LOC_Os07g13280
OsAffx.5312.1.S1_s_at--378--7051Chr07:7626122..7626146 (25 bp)
GTAATGGTCGCCCTGGAAACAGTCA
LOC_Os07g13280
OsAffx.5312.1.S1_s_at--314--2971Chr07:7626120..7626144 (25 bp)
AATGGTCGCCCTGGAAACAGTCAGG
LOC_Os07g13280
OsAffx.5312.1.S1_s_at--649--2451Chr07:7626105..7626129 (25 bp)
AACAGTCAGGGCATTGGAGGTGGGC
LOC_Os07g13280
OsAffx.5312.1.S1_s_at--1034--8011Chr07:7626090..7626114 (25 bp)
GGAGGTGGGCCAAGAGGATTTCAAG
LOC_Os07g13280
OsAffx.5312.1.S1_s_at--56--1011Chr07:7626076..7626100 (25 bp)
AGGATTTCAAGGTAGCGGTCGTCCT
LOC_Os07g13280
OsAffx.5312.1.S1_s_at--1151--9271Chr07:7626064..7626088 (25 bp)
TAGCGGTCGTCCTGGAAGCGGTAGT
LOC_Os07g13280
OsAffx.5312.1.S1_s_at--417--8511Chr07:7626052..7626076 (25 bp)
TGGAAGCGGTAGTCAGGGCGGTGGT
LOC_Os07g13280
Target Sequence 
CAAAGAGGACAATTTCATCAAGGTAATGGTCGCCCTGGAAACAGTCAGGGCATTGGAGGTGGGCCAAGAGGATTTCAAGG
TAGCGGTCGTCCTGGAAGCGGTAGTCAGGGCGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5312.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis