Browse Element(s) Details


OsAffx.5443.1.S1_at

Description tigr:9635.m02479
TID=OsAffx.5443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2583011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25770OsAffx.5440.1.S1_at11/117+14807179..14807499hypothetical protein
LOC_Os07g25780OsAffx.5441.1.S1_at11/117+14808994..14809500hypothetical protein
LOC_Os07g25790NANA7+14816298..14816803hypothetical protein
LOC_Os07g25800OsAffx.28587.1.S1_at11/117+14819084..14820554F-box domain containing protein, expressed
LOC_Os07g25810Os.6042.1.S1_at11/117+14822373..14823930transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g25820OsAffx.28588.1.S1_at11/117+14825961..14826463hypothetical protein
LOC_Os07g25830OsAffx.5443.1.S1_at11/117+14828639..14829619hypothetical protein
LOC_Os07g25840NANA7+14835046..14838771retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g25850Os.24831.1.S1_x_at8/117+14843400..14845300retrotransposon protein, putative, unclassified
LOC_Os07g25850Os.24831.3.S1_s_at6/117+14843400..14845300retrotransposon protein, putative, unclassified
LOC_Os07g25850Os.24831.3.S1_x_at5/117+14843400..14845300retrotransposon protein, putative, unclassified
LOC_Os07g25850Os.24831.4.S1_x_at2/117+14843400..14845300retrotransposon protein, putative, unclassified
LOC_Os07g25860OsAffx.11392.2.S1_x_at3/117+14852922..14855485retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5443.1.S1_at--342--2131Chr07:14829034..14829058 (25 bp)
ACAGTGGCAGCGGCGTCTTGTCGTC
LOC_Os07g25830
OsAffx.5443.1.S1_at--424--8371Chr07:14829045..14829069 (25 bp)
GGCGTCTTGTCGTCGGCGACAGCAC
LOC_Os07g25830
OsAffx.5443.1.S1_at--1098--1491Chr07:14829065..14829089 (25 bp)
AGCACGGTGGCTAGTCAACGACAAT
LOC_Os07g25830
OsAffx.5443.1.S1_at--712--8491Chr07:14829072..14829096 (25 bp)
TGGCTAGTCAACGACAATGGCGGTT
LOC_Os07g25830
OsAffx.5443.1.S1_at--773--1851Chr07:14829082..14829106 (25 bp)
ACGACAATGGCGGTTGCCGGCTGCT
LOC_Os07g25830
OsAffx.5443.1.S1_at--708--5751Chr07:14829155..14829179 (25 bp)
GACGGTCGTGGTAGCGGCCGGACGA
LOC_Os07g25830
OsAffx.5443.1.S1_at--490--3411Chr07:14829219..14829243 (25 bp)
CAGCAGCAGCGACTGTGGTAGTGGT
LOC_Os07g25830
OsAffx.5443.1.S1_at--898--1031Chr07:14829249..14829273 (25 bp)
AGGTCGCATGGTGGCCTCGAACGGC
LOC_Os07g25830
OsAffx.5443.1.S1_at--1098--451Chr07:14829382..14829406 (25 bp)
ATCTCGGCGCAAGAGATTGAGGCCG
LOC_Os07g25830
OsAffx.5443.1.S1_at--335--7971Chr07:14829489..14829513 (25 bp)
GGCTGGTAGTGGAGAAGGCGACCCT
LOC_Os07g25830
OsAffx.5443.1.S1_at--631--10291Chr07:14829550..14829574 (25 bp)
TTTCGGCGCACAAAGGTTGGCCGGC
LOC_Os07g25830
Target Sequence 
ACAGTGGCAGCGGCGTCTTGTCGTCGGCGACAGCACGGTGGCTAGTCAACGACAATGGCGGTTGCCGGCTGCTGTGGCAA
TGGGGCACTCGCGGCGGAGGCAGCGACGCAGAGCTCGTGGCGACGGTCGTGGTAGCGGCCGGACGACGGTGATGGGCTGC
GGCTGGCCAGCGGCGAGTTGGCCGTCAGCAGCAGCGACTGTGGTAGTGGTGTGGGAGGTCGCATGGTGGCCTCGAACGGC
TAGCCGAGGGCATGGCAGACGGCTGCACCTGGCCAGCGCGACAGCGTATGGAGGAGGGGTCGAAGACCGGCTTGGCGCCG
AGAGGTGCAGCCGATGGCAGCGGAGGCCATCTCGGCGCAAGAGATTGAGGCCGGCTTGGCACGAGAGAAGCGGCCGATGG
AGGGAGGCCGGATTGGCGCGTCTGGTGGAGGAGGCCGGTTTGGCGCGAGAGGCACGGCTGGTAGTGGAGAAGGCGACCCT
GGTGCGAGGAGGAGCTGCCGGTTGGTGTGGCACGGTTTTCGGCGCACAAAGGTTGGCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis