Browse Element(s) Details


OsAffx.5546.1.S1_at

Description tigr:9635.m03563
TID=OsAffx.5546.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3605011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36000Os.27639.1.S1_x_at10/117+21531049..21535981transposon protein, putative, unclassified
LOC_Os07g36000OsAffx.8980.1.S1_at9/117+21531049..21535981transposon protein, putative, unclassified
LOC_Os07g36010Os.10827.1.S1_x_at10/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010Os.46055.2.S1_x_at7/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_at1/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36010OsAffx.9045.1.S1_x_at1/117+21539647..21549225transposon protein, putative, unclassified
LOC_Os07g36020NANA7+21549834..21550448hypothetical protein
LOC_Os07g36030OsAffx.25936.1.S1_s_at9/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.7.S1_s_at8/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.2.S1_x_at6/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.5.S1_x_at2/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36040OsAffx.28773.1.S1_at10/117+21557089..21557835Strictosidine synthase family protein
LOC_Os07g36050OsAffx.5546.1.S1_at11/117+21559823..21560332hypothetical protein
LOC_Os07g36060OsAffx.28773.1.S1_at4/117+21562362..21563417Strictosidine synthase family protein
LOC_Os07g36070OsAffx.15821.1.S1_at10/117+21564127..21567628hypothetical protein
LOC_Os07g36070OsAffx.16289.1.S1_x_at1/117+21564127..21567628hypothetical protein
LOC_Os07g36080Os.11078.1.S1_a_at11/117+21572752..21574339Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative, expressed
LOC_Os07g36090Os.52996.1.S1_at11/117+21574541..21577636ribosomal protein L28 containing protein, expressed
LOC_Os07g36100NANA7+21578258..21579010transposon protein, putative, unclassified
LOC_Os07g36110Os.54499.1.S1_at11/117+21581163..21582268expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5546.1.S1_at--318--714Chr11:12571141..12571183 (24 bp)
ATGAGGATGGCCGAGAGCTTTCCAC
NONE
OsAffx.5546.1.S1_at--1053--5911Chr07:21560255..21560279 (25 bp)
GAGCTTTCCACGACGACGAGTGAGA
LOC_Os07g36050
OsAffx.5546.1.S1_at--532--10591Chr07:21560228..21560252 (25 bp)
TTCTCGAGGCCTTGTGGTGGCGAAT
LOC_Os07g36050
OsAffx.5546.1.S1_at--72--4591Chr07:21560209..21560233 (25 bp)
GCGAATCTGCATGCTCGAGGCCCAA
LOC_Os07g36050
OsAffx.5546.1.S1_at--104--2771Chr07:21560185..21560209 (25 bp)
AAGACGGCAGATCCACCTGCGTCAA
LOC_Os07g36050
OsAffx.5546.1.S1_at--68--8571Chr07:21560148..21560172 (25 bp)
TGGATCTAGATTCCCAAGGCCCTAT
LOC_Os07g36050
OsAffx.5546.1.S1_at--1155--2931Chr07:21560133..21560157 (25 bp)
AAGGCCCTATGGTTGCAAACCTGAT
LOC_Os07g36050
OsAffx.5546.1.S1_at--618--4731Chr07:21560062..21560086 (25 bp)
GCTGTCATCACGATCGTGGTCACAG
LOC_Os07g36050
OsAffx.5546.1.S1_at--492--8571Chr07:21560046..21560070 (25 bp)
TGGTCACAGTCGTCATCACTATTGT
LOC_Os07g36050
OsAffx.5546.1.S1_at--220--2031Chr07:21560029..21560053 (25 bp)
ACTATTGTCGTTGTGGTGGTGGTCA
LOC_Os07g36050
OsAffx.5546.1.S1_at--1162--7491Chr07:21560011..21560035 (25 bp)
GTGGTCACGGTCATCGTTGCAGGCC
LOC_Os07g36050
Target Sequence 
ATGAGGATGGCCGAGAGCTTTCCACGACGACGAGTGAGAGCTTCTCGAGGCCTTGTGGTGGCGAATCTGCATGCTCGAGG
CCCAAAGACGGCAGATCCACCTGCGTCAAGCTCGGCGGCGGTGGATCTAGATTCCCAAGGCCCTATGGTTGCAAACCTGA
TGCTCCTGAGGCCGGTGACGGCGGATTCAAGCTGTGGAGGTCACATCGCTGTCATCACGATCGTGGTCACAGTCGTCATC
ACTATTGTCGTTGTGGTGGTGGTCACGGTCATCGTTGCAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis