Browse Element(s) Details


OsAffx.5561.1.S1_s_at

Description tigr:9635.m03710
TID=OsAffx.5561.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=short-chain type dehydrogenasereductase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3742011/11Short-chain type dehydrogenase/reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37370OsAffx.28798.2.S1_s_at11/117+22388990..22390874hypothetical protein
LOC_Os07g37370OsAffx.28798.1.S1_at8/117+22388990..22390874hypothetical protein
LOC_Os07g37380NANA7+22402345..22403543expressed protein
LOC_Os07g37390OsAffx.5560.1.S1_at9/117+22408440..22409259hypothetical protein
LOC_Os07g37400Os.8724.1.S1_at11/117+22409532..22411377F-box domain containing protein, expressed
LOC_Os07g37410OsAffx.28340.3.S1_x_at11/117+22413096..22413977hypothetical protein
LOC_Os07g37410OsAffx.28340.1.S1_x_at1/117+22413096..22413977hypothetical protein
LOC_Os07g37420OsAffx.5561.1.S1_s_at11/117+22414480..22415518Short-chain type dehydrogenase/reductase, putative, expressed
LOC_Os07g37430OsAffx.28800.1.S1_x_at8/117+22416251..22417102hypothetical protein
LOC_Os07g37440OsAffx.16597.1.S1_at11/117+22417314..22418394hypothetical protein
LOC_Os07g37454OsAffx.28801.1.S1_s_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S2_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S1_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37470Os.47463.1.S1_x_at3/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37470Os.14491.2.S1_x_at2/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37480Os.56255.1.S1_x_at11/117+22440418..22442682expressed protein
LOC_Os07g37480Os.56255.1.S1_at10/117+22440418..22442682expressed protein
LOC_Os07g37480OsAffx.23361.2.S1_x_at1/117+22440418..22442682expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0004316molecular_function3-oxoacyl-[acyl-carrier protein] reductase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5561.1.S1_s_at--221--6231Chr07:22415301..22415325 (25 bp)
GAGGCCGGCGACATCGCGCCAGTGG
LOC_Os07g37420
OsAffx.5561.1.S1_s_at--447--891Chr07:22415302..22415326 (25 bp)
AGGCCGGCGACATCGCGCCAGTGGT
LOC_Os07g37420
OsAffx.5561.1.S1_s_at--984--4091Chr07:22415309..22415333 (25 bp)
CGACATCGCGCCAGTGGTCGGGTTC
LOC_Os07g37420
OsAffx.5561.1.S1_s_at--271--5671Chr07:22415310..22415334 (25 bp)
GACATCGCGCCAGTGGTCGGGTTCC
LOC_Os07g37420
OsAffx.5561.1.S1_s_at--205--2091Chr07:22415311..22415335 (25 bp)
ACATCGCGCCAGTGGTCGGGTTCCT
LOC_Os07g37420
OsAffx.5561.1.S1_s_at--41--531Chr07:22415313..22415337 (25 bp)
ATCGCGCCAGTGGTCGGGTTCCTCT
LOC_Os07g37420
OsAffx.5561.1.S1_s_at--516--9331Chr07:22415314..22415338 (25 bp)
TCGCGCCAGTGGTCGGGTTCCTCTG
LOC_Os07g37420
OsAffx.5561.1.S1_s_at--1074--4551Chr07:22415316..22415340 (25 bp)
GCGCCAGTGGTCGGGTTCCTCTGCA
LOC_Os07g37420
OsAffx.5561.1.S1_s_at--494--10071Chr07:22415477..22415501 (25 bp)
TAGTGAGCAGCAGCACTGACTTGCT
LOC_Os07g37420
OsAffx.5561.1.S1_s_at--368--1111Chr07:22415478..22415502 (25 bp)
AGTGAGCAGCAGCACTGACTTGCTA
LOC_Os07g37420
OsAffx.5561.1.S1_s_at--197--7391Chr07:22415479..22415503 (25 bp)
GTGAGCAGCAGCACTGACTTGCTAA
LOC_Os07g37420
Target Sequence 
GAGGCCGGCGACATCGCGCCAGTGGTCGGGTTCCTCTGCACCGACGCCGCCGAGTGGGTCAACGGCCAGGTCATCCGGGT
CAACGGCGGGTACGTGTGATGCATAGCTCGTGGATTTATTGGCGGGAATAAAGTTCGAGTGTTCGCATGTTGAAAAAAAC
TGAATAAAATTTGGGATAGTGAGCAGCAGCACTGACTTGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5561.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis