Browse Element(s) Details


OsAffx.5572.1.S1_at

Description tigr:9635.m03879
TID=OsAffx.5572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable beta-1,3-glucanase (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3893010/11Glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38860NANA7+23312788..23317460indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os07g38870OsAffx.16619.1.S1_at11/117+23320550..23321350hypothetical protein
LOC_Os07g38880NANA7+23322811..23323176hypothetical protein
LOC_Os07g38890Os.54822.1.S1_at11/117+23323505..23325533indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os07g38900Os.28814.2.S1_x_at1/117+23326517..23327484hypothetical protein
LOC_Os07g38910OsAffx.5571.1.S1_at11/117+23328327..23329152histidine kinase 1, putative, expressed
LOC_Os07g38930OsAffx.5572.1.S1_at10/117+23342395..23346718Glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g38940Os.57174.1.S1_at11/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38940OsAffx.16621.1.S1_at10/117+23347747..23350794Ubiquitin-conjugating enzyme E2 E3, putative, expressed
LOC_Os07g38950Os.18307.1.S1_at11/117+23351259..23353084expressed protein
LOC_Os07g38960Os.37713.1.S1_at11/117+23356083..23357999Chlorophyll a-b binding protein 7, chloroplast precursor, putative, expressed
LOC_Os07g38970Os.38799.1.S1_at11/117+23359440..23364233Succinyl-CoA ligase alpha-chain 2, mitochondrial precursor, putative, expressed
LOC_Os07g38980OsAffx.16622.1.S1_at11/117+23365095..23369130hypothetical protein
LOC_Os07g38980OsAffx.18481.1.S1_x_at2/117+23365095..23369130hypothetical protein
LOC_Os07g38990Os.36711.1.S1_at11/117+23369857..23372191expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5572.1.S1_at--141--10511Chr07:23345176..23345200 (25 bp)
TTCAATGAGGATCTTCGGGCTGGAC
LOC_Os07g38930
OsAffx.5572.1.S1_at--634--8791Chr07:23345228..23345252 (25 bp)
TGTTCCCCAATGCAACTACTGTGTA
LOC_Os07g38930
OsAffx.5572.1.S1_at--1053--5651Chr07:23345269..23345293 (25 bp)
GACATGGCCACAACTAATACAGATT
LOC_Os07g38930
OsAffx.5572.1.S1_at--267--6571Chr07:23345290..23345314 (25 bp)
GATTCACCAGTTTTGCGAGGGACAT
LOC_Os07g38930
OsAffx.5572.1.S1_at--513--10071Chr07:23345331..23345355 (25 bp)
TAGTGCTCCTCATAGCGCATTGAAG
LOC_Os07g38930
OsAffx.5572.1.S1_at--523--3291Chr07:23345356..23345380 (25 bp)
CAAAGCTTGGATTGGGCCTGTGGCC
LOC_Os07g38930
OsAffx.5572.1.S1_at--69--7351Chr07:23345399..23345423 (25 bp)
GTGCAATTCAACCTGGGCAACCATG
LOC_Os07g38930
OsAffx.5572.1.S1_at--926--1291Chr07:23345433..23345457 (25 bp)
AGATGACATTGTCGCTGTTGCTTCT
LOC_Os07g38930
OsAffx.5572.1.S1_at--145--4751Chr07:23345446..23345470 (25 bp)
GCTGTTGCTTCTTATGCTTTCAATG
LOC_Os07g38930
OsAffx.5572.1.S1_at--878--5051Chr07:23346563..23346587 (25 bp)
GCAGCACTGGCTCCAATGGCAGCAA
LOC_Os07g38930
OsAffx.5572.1.S1_at--188--9471Chr07:23346601..23347105 (25 bp)
TCTGGGCCCCAGATGCAAAAATGTC
NONE
Target Sequence 
TTCAATGAGGATCTTCGGGCTGGACCTGTCTCAGAGAAAAATTGGGGCATCATGTTCCCCAATGCAACTACTGTGTACAG
CCTTACATTTGAAGACATGGCCACAACTAATACAGATTCACCAGTTTTGCGAGGGACATTCTGTGTAGCAAATTCTAGTG
CTCCTCATAGCGCATTGAAGCAAAGCTTGGATTGGGCCTGTGGCCCTGGCTCTGCAAACTGCAGTGCAATTCAACCTGGG
CAACCATGCTATAAATCAGATGACATTGTCGCTGTTGCTTCTTATGCTTTCAATGATTATTACCATAGGACACGAGCAAG
TGGCGGAACATGCAACTTCAATAGCACGGCAATGGTGACATCTACTGATCCAAGAATGGCCATGGTTCATGCATTTTTGC
AGGAAGTGTTGGTTCTTCTTGCAGCACTGGCTCCAATGGCAGCAACGGTGGTGCGGCGTCTGGGCCCCAGATGCAAAAAT
GTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis