Browse Element(s) Details


OsAffx.5630.1.S1_x_at

Description tigr:9635.m04418
TID=OsAffx.5630.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4401011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43970Os.34315.1.S1_at11/117+26286279..26289370calmodulin-binding family protein, putative, expressed
LOC_Os07g43980Os.41098.1.S1_at11/117+26290499..26294460DEAD/DEAH box helicase family protein, expressed
LOC_Os07g43990Os.8175.1.S1_at11/117+26296631..26298846expressed protein
LOC_Os07g44000OsAffx.28894.1.S1_at11/117+26299652..26300601hypothetical protein
LOC_Os07g44010OsAffx.5630.1.S1_x_at11/117+26306253..26306835expressed protein
LOC_Os07g44020Os.41096.1.S1_at11/117+26307425..26309991DedA family protein, expressed
LOC_Os07g44030OsAffx.28966.1.S1_at11/117+26311499..26313157myb family transcription factor, putative
LOC_Os07g44040Os.20297.1.S1_at11/117+26319587..26322425Ras-related protein ARA-4, putative, expressed
LOC_Os07g44050Os.20864.1.A1_at11/117+26323397..26324948expressed protein
LOC_Os07g44050Os.20864.2.S1_at1/117+26323397..26324948expressed protein
LOC_Os07g44060Os.6362.1.S1_at11/117+26325708..26328066haloacid dehalogenase-like hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5630.1.S1_x_at--1152--4851Chr07:26306284..26306308 (25 bp)
GCTAGCTAGTATAGCTCTAGCTTCT
LOC_Os07g44010
OsAffx.5630.1.S1_x_at--205--1591Chr07:26306296..26306320 (25 bp)
AGCTCTAGCTTCTTCTTGCTCGCTC
LOC_Os07g44010
OsAffx.5630.1.S1_x_at--869--10551Chr07:26306308..26306332 (25 bp)
TTCTTGCTCGCTCGCATGGGTCTCG
LOC_Os07g44010
OsAffx.5630.1.S1_x_at--268--10711Chr07:26306311..26306335 (25 bp)
TTGCTCGCTCGCATGGGTCTCGAGG
LOC_Os07g44010
OsAffx.5630.1.S1_x_at--266--9351Chr07:26306315..26306339 (25 bp)
TCGCTCGCATGGGTCTCGAGGTGCT
LOC_Os07g44010
OsAffx.5630.1.S1_x_at--942--3791Chr07:26306318..26306342 (25 bp)
CTCGCATGGGTCTCGAGGTGCTCAT
LOC_Os07g44010
OsAffx.5630.1.S1_x_at--193--7311Chr07:26306335..26306359 (25 bp)
GTGCTCATGGCGAGAGACCAGCTGC
LOC_Os07g44010
OsAffx.5630.1.S1_x_at--505--9091Chr07:26306336..26306360 (25 bp)
TGCTCATGGCGAGAGACCAGCTGCT
LOC_Os07g44010
OsAffx.5630.1.S1_x_at--1150--1711Chr07:26306351..26306375 (25 bp)
ACCAGCTGCTGCAGCGCCCGAGGTG
LOC_Os07g44010
OsAffx.5630.1.S1_x_at--193--6151Chr07:26306370..26306394 (25 bp)
GAGGTGGCGGTACGAGCGGCTGCGC
LOC_Os07g44010
OsAffx.5630.1.S1_x_at--897--10571Chr07:26306776..26306800 (25 bp)
TTCTACCTCGAGAGGAGCCTCTCCT
LOC_Os07g44010
Target Sequence 
GCTAGCTAGTATAGCTCTAGCTTCTTCTTGCTCGCTCGCATGGGTCTCGAGGTGCTCATGGCGAGAGACCAGCTGCTGCA
GCGCCCGAGGTGGCGGTACGAGCGGCTGCGCGGCGACGGCGACGGCGACGGCGAGGAGGCGGCGGCGGGGGTTTGCAGGG
TGAGGCGGCAGCTGCGGCTGAGGAGGAGAGTGGTGGCCGCCGGCGCCGCCGGGAGGATGGCGCGCGGCGGCGGCGGCGGC
GGCGGCGGGAGGAAGAAGGTGAGGCTGATGCGGCTGGTGTTCCTGCTCCCGGCGCGGCGGGTGGCCGCGCTGTTCGCCGA
GCTCGTGCGCCGGCTGGCCGCCGCGGCGGCGGCGAGCGTCGTCGTCGACGCGGCGGCCGAGTGCCCCACCATCGTCTTCT
CCTCCCAGTGGGGCCTCCCCGTCCTCTCCCACTCGGCCAGCGGCGGCGGCGGCGGCGCCGCCTCCGCCGCCCGGAACGCC
AGGCTGCGCGCCTTCTACCTCGAGAGGAGCCTCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5630.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis