Browse Element(s) Details


OsAffx.5695.1.S1_at

Description tigr:9636.m00328
TID=OsAffx.5695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0407011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04020OsAffx.19542.3.S1_x_at7/118+1937929..1943104retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g04020OsAffx.21754.1.S1_x_at2/118+1937929..1943104retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g04030OsAffx.5694.1.S1_at11/118+1944542..1945703hypothetical protein
LOC_Os08g04040OsAffx.16821.1.S1_at10/118+1953352..1955403hypothetical protein
LOC_Os08g04050NANA8+1957913..1959035retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.22699.1.S1_x_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.20020.1.S1_x_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.10039.1.S1_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04070OsAffx.5695.1.S1_at11/118+1967211..1968404hypothetical protein
LOC_Os08g04080Os.19099.1.S1_x_at2/118+1972270..1974459retrotransposon, putative, centromere-specific
LOC_Os08g04090Os.52271.1.S1_at11/118+1982002..1984474expressed protein
LOC_Os08g04100NANA8+1986627..1987348hypothetical protein
LOC_Os08g04110Os.48856.1.S1_at11/118+1988178..1992555Phosphate/phosphoenolpyruvate translocator, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5695.1.S1_at--428--9271Chr08:1967694..1967937 (25 bp)
TCCTGCTATTCCAGAGTCATCACTG
LOC_Os08g04070
OsAffx.5695.1.S1_at--748--4351Chr08:1967684..1967705 (22 bp)
CCAGAGTCATCACTGGACAGCTTGG
LOC_Os08g04070
OsAffx.5695.1.S1_at--636--51Chr08:1967653..1967677 (25 bp)
ATTGCGGATCAATCAGGGCTCGGTT
LOC_Os08g04070
OsAffx.5695.1.S1_at--203--311Chr08:1967646..1967670 (25 bp)
ATCAATCAGGGCTCGGTTACACGAA
LOC_Os08g04070
OsAffx.5695.1.S1_at--1040--8311Chr08:1967637..1967661 (25 bp)
GGCTCGGTTACACGAAATTCAAGCT
LOC_Os08g04070
OsAffx.5695.1.S1_at--222--3151Chr08:1967622..1967646 (25 bp)
AATTCAAGCTCTGATTTTGGATGAG
LOC_Os08g04070
OsAffx.5695.1.S1_at--72--4791Chr08:1967532..1967556 (25 bp)
GCTAAGACTAGCTGAACACCGGGAA
LOC_Os08g04070
OsAffx.5695.1.S1_at--1106--1391Chr08:1967528..1967552 (25 bp)
AGACTAGCTGAACACCGGGAACGTA
LOC_Os08g04070
OsAffx.5695.1.S1_at--1041--8951Chr08:1967520..1967544 (25 bp)
TGAACACCGGGAACGTAGGGATATT
LOC_Os08g04070
OsAffx.5695.1.S1_at--1025--9271Chr08:1967314..1967338 (25 bp)
TCCCTCAAGTCGTCGAAGAACAAAA
LOC_Os08g04070
OsAffx.5695.1.S1_at--1093--8911Chr08:1967251..1967275 (25 bp)
TGACCAAGTCTATAAAGTCATCTCC
LOC_Os08g04070
Target Sequence 
TCCTGCTATTCCAGAGTCATCACTGGACAGCTTGGTGGTCGATTGCGGATCAATCAGGGCTCGGTTACACGAAATTCAAG
CTCTGATTTTGGATGAGCTAGCCGATATCCTTACTCCAGCTGTCTATCTCGAACAACACCAATTCAAGCTGGAGAATGCC
AAGCTAAGACTAGCTGAACACCGGGAACGTAGGGATATTGAAAGTACAATCCAGGCCAATCGGCAGCTCGTACATGAAGA
GAAGGCCAAGCTTGATCAATTATCTGAAGGTCCAATCAAGTCTAACATTGATCGGCTTGAAGCCCAAAAGATTGAGCTCA
TAGCCCAACTTGAAGAATGCAACGCCGAGCTGGCCCTGGAACAAAAGAAGCTAGCCGATCTCCCTCAAGTCGTCGAAGAA
CAAAAGGCAAGGCTGAAATCGGCTATCAAGAATGTCGCTGATCTGACCAAGTCTATAAAGTCATCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis