Browse Element(s) Details


OsAffx.5699.1.S1_at

Description tigr:9636.m00372
TID=OsAffx.5699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0447011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04430OsAffx.16825.1.S1_s_at10/118+2164054..2165002expressed protein
LOC_Os08g04440Os.9748.1.S1_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04440Os.9748.2.S1_x_at10/118+2167191..2170704RNA recognition motif family protein, expressed
LOC_Os08g04450Os.5754.1.S1_at11/118+2171814..2173858DAG protein, chloroplast precursor, putative, expressed
LOC_Os08g04460Os.9162.1.S1_at11/118+2176426..2178461NADPH-dependent FMN reductase family protein, expressed
LOC_Os08g04470OsAffx.5699.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04470Os.54040.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04480OsAffx.5700.1.S1_x_at11/118+2197103..2197961hypothetical protein
LOC_Os08g04490OsAffx.5701.1.S1_at11/118+2198769..2203345hypothetical protein
LOC_Os08g04500Os.57569.2.A1_s_at11/118+2203682..2207548Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g04510OsAffx.22848.3.S1_x_at3/118+2212585..2218544retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5699.1.S1_at--286--8111Chr08:2189953..2189977 (25 bp)
GGACGTCAACAAGTGCACCATCGGG
LOC_Os08g04470
OsAffx.5699.1.S1_at--48--7571Chr08:2189706..2189730 (25 bp)
GGGCGCCACGAGCTGTCCAGGATCC
LOC_Os08g04470
OsAffx.5699.1.S1_at--535--9411Chr08:2189615..2189639 (25 bp)
TCGTCGTCCTCAACTTGATCTGCGG
LOC_Os08g04470
OsAffx.5699.1.S1_at--92--9411Chr08:2189612..2189636 (25 bp)
TCGTCCTCAACTTGATCTGCGGCGA
LOC_Os08g04470
OsAffx.5699.1.S1_at--532--3251Chr08:2189584..2189608 (25 bp)
CAACCAATTGGCGAGGGAGGCGATC
LOC_Os08g04470
OsAffx.5699.1.S1_at--564--8011Chr08:2189569..2189593 (25 bp)
GGAGGCGATCAAGCTCGGAGCATTC
LOC_Os08g04470
OsAffx.5699.1.S1_at--870--6451Chr08:2189563..2189587 (25 bp)
GATCAAGCTCGGAGCATTCCATCTC
LOC_Os08g04470
OsAffx.5699.1.S1_at--350--5931Chr08:2189552..2189576 (25 bp)
GAGCATTCCATCTCTGCGAGGCTCT
LOC_Os08g04470
OsAffx.5699.1.S1_at--980--451Chr08:2189543..2189567 (25 bp)
ATCTCTGCGAGGCTCTCGTCAACGA
LOC_Os08g04470
OsAffx.5699.1.S1_at--596--6211Chr08:2189535..2189559 (25 bp)
GAGGCTCTCGTCAACGACGACAACT
LOC_Os08g04470
OsAffx.5699.1.S1_at--184--9412Chr06:24372915..24373031 (24 bp)
TCGTCAACGACGACAACTGCAAGAT
NONE
Target Sequence 
GGACGTCAACAAGTGCACCATCGGGGCGCACCCCTCGGCCGTCCCGGCGCTGGTCGGCCTCCTCCGCCGCGGCGGCGGCG
CGCGGGAGCGGCGCGAGGCCGCCACGGCGCTGTACGAGCTCTGCAAGCTGCCGGAGAACAGGCGCCGCGCCGTGCGCGCC
GGGGCGGCGCCCGCGCTCGTCGACCTCGCCGCCGCGGGCTCCGCGCGCGCCGCCGAGGTGCTCGGCCTCTTCGCCAAGTC
CCGCGAGGGGCGCCACGAGCTGTCCAGGATCCCCCGCGTCGTCGCCGTGCTCGTCGGCGTCGCCGGCAGCGGCAACGCGC
GCGCCATCGAGCAGGCGCTCGTCGTCCTCAACTTGATCTGCGGCGAGAGCAACCAATTGGCGAGGGAGGCGATCAAGCTC
GGAGCATTCCATCTCTGCGAGGCTCTCGTCAACGACGACAACTGCAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis