Browse Element(s) Details


OsAffx.5705.1.S1_at

Description tigr:9636.m00393
TID=OsAffx.5705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0467011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04620Os.27768.1.S1_at11/118+2299465..2302161Membrane associated protein, putative, expressed
LOC_Os08g04620Os.34006.1.S1_x_at1/118+2299465..2302161Membrane associated protein, putative, expressed
LOC_Os08g04630Os.34139.1.S1_at6/118+2304024..2308749EF hand family protein, expressed
LOC_Os08g04640OsAffx.29032.1.S1_at11/118+2314093..2314650expressed protein
LOC_Os08g04650Os.53290.1.S1_at11/118+2316203..2317294pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g04660OsAffx.16828.1.S1_at11/118+2323968..2324393hypothetical protein
LOC_Os08g04670OsAffx.5705.1.S1_at11/118+2325991..2326566expressed protein
LOC_Os08g04680OsAffx.29033.1.S1_at4/118+2329913..2330820hypothetical protein
LOC_Os08g04690NANA8+2332315..2333011expressed protein
LOC_Os08g04700OsAffx.29034.1.S1_at11/118+2335365..2335901hypothetical protein
LOC_Os08g04710OsAffx.29035.1.S1_at11/118+2337777..2338343hypothetical protein
LOC_Os08g04720OsAffx.22848.4.S1_at2/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04720OsAffx.22848.4.S1_x_at1/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04720OsAffx.22848.3.S1_x_at1/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04730NANA8+2351089..2354941retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5705.1.S1_at--696--4471Chr08:2326473..2326497 (25 bp)
GCCTGCGAAGACTACGACGTGCCGA
LOC_Os08g04670
OsAffx.5705.1.S1_at--990--2751Chr08:2326466..2326490 (25 bp)
AAGACTACGACGTGCCGATGATGTC
LOC_Os08g04670
OsAffx.5705.1.S1_at--1048--1851Chr08:2326460..2326484 (25 bp)
ACGACGTGCCGATGATGTCGGCAGC
LOC_Os08g04670
OsAffx.5705.1.S1_at--177--5871Chr08:2326406..2326430 (25 bp)
GAGCCATGTCCGAGATGTGCGCCGA
LOC_Os08g04670
OsAffx.5705.1.S1_at--369--3951Chr08:2326178..2326202 (25 bp)
CGGTCGGGCACCTGAACGGCTGCCA
LOC_Os08g04670
OsAffx.5705.1.S1_at--845--2571Chr08:2326164..2326188 (25 bp)
AACGGCTGCCAGCTGGTGGAGCTCA
LOC_Os08g04670
OsAffx.5705.1.S1_at--228--3971Chr08:2326075..2326099 (25 bp)
CGGGTTCTCGCCGTTGTACAACAGG
LOC_Os08g04670
OsAffx.5705.1.S1_at--675--10591Chr08:2326071..2326095 (25 bp)
TTCTCGCCGTTGTACAACAGGGTGA
LOC_Os08g04670
OsAffx.5705.1.S1_at--48--291Chr08:2326047..2326071 (25 bp)
ATAGGTGACCGGGATCGCTGCGTGC
LOC_Os08g04670
OsAffx.5705.1.S1_at--1000--7651Chr08:2326037..2326061 (25 bp)
GGGATCGCTGCGTGCTCGCTCTACG
LOC_Os08g04670
OsAffx.5705.1.S1_at--354--9331Chr08:2326022..2326046 (25 bp)
TCGCTCTACGCCTCATTAGTATTCT
LOC_Os08g04670
Target Sequence 
GCCTGCGAAGACTACGACGTGCCGATGATGTCGGCAGCGGTGGCGTTCGAGAGGGCGAGCACGGGGCGAGCCATGTCCGA
GATGTGCGCCGACGAGGTGGGCACCGCGACGGCGCCGGACCAGGAGGTGACCGACTTCGTGTTCGCCGCCGTGAGCGCCG
CCGCCCGGTCGTGCGGCGCCACCGCGCGCGCCGTCCGCGACATGGCGCGGGACCCGTCGACGCCGCCGGGCGCGAGGGAG
GCCGGCCGGGCCTGCGACGGCAGGTACGGCGAGGCCATGGCGCGGCTCGCCGACGCGGTCGGGCACCTGAACGGCTGCCA
GCTGGTGGAGCTCAGCGCGGATGCCCCGGCGGCCATCGCCGCCGTCGACGACCGCACCACCGCGCTCCTGCCCGTCGTCG
GGTTCTCGCCGTTGTACAACAGGGTGATAGGTGACCGGGATCGCTGCGTGCTCGCTCTACGCCTCATTAGTATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis